Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24570 and RR42_RS24575 are separated by 714 nucleotides RR42_RS24575 and RR42_RS24580 are separated by 59 nucleotides
RR42_RS24570: RR42_RS24570 - alpha/beta hydrolase, at 845,289 to 846,266
_RS24570
RR42_RS24575: RR42_RS24575 - endoribonuclease L-PSP, at 846,981 to 847,394
_RS24575
RR42_RS24580: RR42_RS24580 - hypothetical protein, at 847,454 to 848,818
_RS24580
Position (kb) 846
847
848 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 846.028 kb on + strand, within RR42_RS24570 at 846.062 kb on + strand, within RR42_RS24570 at 846.108 kb on + strand, within RR42_RS24570 at 846.220 kb on + strand at 846.235 kb on + strand at 846.236 kb on - strand at 846.327 kb on - strand at 846.432 kb on + strand at 846.650 kb on - strand at 846.915 kb on - strand at 846.961 kb on + strand at 846.995 kb on + strand at 847.035 kb on + strand, within RR42_RS24575 at 847.036 kb on - strand, within RR42_RS24575 at 847.282 kb on - strand, within RR42_RS24575 at 847.437 kb on - strand at 847.500 kb on + strand at 847.500 kb on + strand at 847.501 kb on - strand at 847.580 kb on - strand at 847.638 kb on - strand, within RR42_RS24580 at 847.709 kb on + strand, within RR42_RS24580 at 847.709 kb on + strand, within RR42_RS24580 at 847.710 kb on - strand at 847.710 kb on - strand, within RR42_RS24580 at 847.778 kb on + strand, within RR42_RS24580 at 847.828 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.944 kb on - strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.946 kb on - strand, within RR42_RS24580 at 847.946 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 848.177 kb on + strand, within RR42_RS24580 at 848.178 kb on - strand, within RR42_RS24580 at 848.204 kb on + strand, within RR42_RS24580 at 848.204 kb on + strand, within RR42_RS24580 at 848.205 kb on - strand, within RR42_RS24580 at 848.207 kb on + strand, within RR42_RS24580 at 848.286 kb on - strand, within RR42_RS24580 at 848.372 kb on + strand, within RR42_RS24580 at 848.372 kb on + strand, within RR42_RS24580 at 848.390 kb on + strand, within RR42_RS24580 at 848.391 kb on - strand, within RR42_RS24580 at 848.391 kb on - strand, within RR42_RS24580 at 848.391 kb on - strand, within RR42_RS24580
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 846,028 + RR42_RS24570 0.76 +0.7 846,062 + RR42_RS24570 0.79 -0.4 846,108 + RR42_RS24570 0.84 +0.1 846,220 + -0.2 846,235 + -0.9 846,236 - +0.4 846,327 - +0.3 846,432 + -1.8 846,650 - +1.8 846,915 - -0.1 846,961 + +0.2 846,995 + -0.5 847,035 + RR42_RS24575 0.13 +0.4 847,036 - RR42_RS24575 0.13 -2.4 847,282 - RR42_RS24575 0.73 -1.9 847,437 - -0.5 847,500 + +1.7 847,500 + +0.1 847,501 - -0.4 847,580 - -0.3 847,638 - RR42_RS24580 0.13 -0.3 847,709 + RR42_RS24580 0.19 -0.4 847,709 + RR42_RS24580 0.19 +0.6 847,710 - +2.7 847,710 - RR42_RS24580 0.19 +0.8 847,778 + RR42_RS24580 0.24 -3.0 847,828 + RR42_RS24580 0.27 -0.0 847,943 + RR42_RS24580 0.36 +0.1 847,943 + RR42_RS24580 0.36 +0.4 847,943 + RR42_RS24580 0.36 -0.6 847,943 + RR42_RS24580 0.36 -1.8 847,944 - RR42_RS24580 0.36 -0.2 847,945 + RR42_RS24580 0.36 -0.3 847,945 + RR42_RS24580 0.36 +0.0 847,945 + RR42_RS24580 0.36 -0.2 847,945 + RR42_RS24580 0.36 +1.0 847,946 - RR42_RS24580 0.36 -0.4 847,946 - RR42_RS24580 0.36 -0.7 847,950 - RR42_RS24580 0.36 -0.2 847,950 - RR42_RS24580 0.36 +0.3 847,950 - RR42_RS24580 0.36 -0.0 847,950 - RR42_RS24580 0.36 -0.6 847,950 - RR42_RS24580 0.36 +1.7 848,177 + RR42_RS24580 0.53 +1.0 848,178 - RR42_RS24580 0.53 -0.7 848,204 + RR42_RS24580 0.55 -1.5 848,204 + RR42_RS24580 0.55 +0.6 848,205 - RR42_RS24580 0.55 +0.5 848,207 + RR42_RS24580 0.55 -1.1 848,286 - RR42_RS24580 0.61 -0.2 848,372 + RR42_RS24580 0.67 +0.1 848,372 + RR42_RS24580 0.67 -0.9 848,390 + RR42_RS24580 0.69 +0.1 848,391 - RR42_RS24580 0.69 -0.3 848,391 - RR42_RS24580 0.69 +1.4 848,391 - RR42_RS24580 0.69 +0.3
Or see this region's nucleotide sequence