Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24255

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24250 and RR42_RS24255 overlap by 4 nucleotidesRR42_RS24255 and RR42_RS24260 are separated by 428 nucleotides RR42_RS24250: RR42_RS24250 - (2Fe-2S)-binding protein, at 766,578 to 767,666 _RS24250 RR42_RS24255: RR42_RS24255 - hypothetical protein, at 767,663 to 768,619 _RS24255 RR42_RS24260: RR42_RS24260 - hypothetical protein, at 769,048 to 769,824 _RS24260 Position (kb) 767 768 769Strain fitness (log2 ratio) -2 -1 0 1 2at 766.779 kb on + strand, within RR42_RS24250at 766.814 kb on + strand, within RR42_RS24250at 766.814 kb on + strand, within RR42_RS24250at 766.815 kb on - strand, within RR42_RS24250at 766.858 kb on + strand, within RR42_RS24250at 766.859 kb on - strand, within RR42_RS24250at 766.859 kb on - strand, within RR42_RS24250at 766.863 kb on - strand, within RR42_RS24250at 766.988 kb on + strand, within RR42_RS24250at 766.988 kb on + strand, within RR42_RS24250at 767.018 kb on - strand, within RR42_RS24250at 767.118 kb on - strand, within RR42_RS24250at 767.252 kb on + strand, within RR42_RS24250at 767.339 kb on + strand, within RR42_RS24250at 767.339 kb on + strand, within RR42_RS24250at 767.340 kb on - strand, within RR42_RS24250at 767.367 kb on + strand, within RR42_RS24250at 767.367 kb on + strand, within RR42_RS24250at 767.367 kb on + strand, within RR42_RS24250at 767.367 kb on + strand, within RR42_RS24250at 767.368 kb on - strand, within RR42_RS24250at 767.370 kb on + strand, within RR42_RS24250at 767.371 kb on - strand, within RR42_RS24250at 767.371 kb on - strand, within RR42_RS24250at 767.391 kb on + strand, within RR42_RS24250at 767.391 kb on + strand, within RR42_RS24250at 767.391 kb on + strand, within RR42_RS24250at 767.392 kb on - strand, within RR42_RS24250at 767.392 kb on - strand, within RR42_RS24250at 767.499 kb on + strand, within RR42_RS24250at 767.525 kb on + strand, within RR42_RS24250at 767.525 kb on + strand, within RR42_RS24250at 767.525 kb on + strand, within RR42_RS24250at 767.526 kb on - strand, within RR42_RS24250at 767.526 kb on - strand, within RR42_RS24250at 767.526 kb on - strand, within RR42_RS24250at 767.528 kb on + strand, within RR42_RS24250at 767.528 kb on + strand, within RR42_RS24250at 767.625 kb on - strandat 767.625 kb on - strandat 767.671 kb on + strandat 767.672 kb on - strandat 767.672 kb on - strandat 767.672 kb on - strandat 767.706 kb on + strandat 767.706 kb on + strandat 767.706 kb on + strandat 767.706 kb on + strandat 767.706 kb on + strandat 767.707 kb on - strandat 767.707 kb on - strandat 767.707 kb on - strandat 767.707 kb on - strandat 767.718 kb on + strandat 767.815 kb on - strand, within RR42_RS24255at 767.815 kb on - strand, within RR42_RS24255at 767.815 kb on - strand, within RR42_RS24255at 767.815 kb on - strand, within RR42_RS24255at 767.815 kb on - strand, within RR42_RS24255at 767.815 kb on - strand, within RR42_RS24255at 767.815 kb on - strand, within RR42_RS24255at 767.823 kb on - strand, within RR42_RS24255at 768.019 kb on + strand, within RR42_RS24255at 768.020 kb on - strand, within RR42_RS24255at 768.080 kb on + strand, within RR42_RS24255at 768.081 kb on - strand, within RR42_RS24255at 768.155 kb on + strand, within RR42_RS24255at 768.155 kb on + strand, within RR42_RS24255at 768.155 kb on + strand, within RR42_RS24255at 768.155 kb on + strand, within RR42_RS24255at 768.156 kb on - strand, within RR42_RS24255at 768.203 kb on - strand, within RR42_RS24255at 768.227 kb on + strand, within RR42_RS24255at 768.227 kb on + strand, within RR42_RS24255at 768.227 kb on + strand, within RR42_RS24255at 768.227 kb on + strand, within RR42_RS24255at 768.227 kb on + strand, within RR42_RS24255at 768.446 kb on + strand, within RR42_RS24255at 768.446 kb on + strand, within RR42_RS24255at 768.447 kb on - strand, within RR42_RS24255at 768.447 kb on - strand, within RR42_RS24255at 768.447 kb on - strand, within RR42_RS24255at 768.447 kb on - strand, within RR42_RS24255at 768.525 kb on + strandat 768.525 kb on + strandat 768.526 kb on - strandat 768.564 kb on + strandat 768.564 kb on + strandat 768.564 kb on + strandat 768.564 kb on + strandat 768.565 kb on - strandat 768.565 kb on - strandat 768.565 kb on - strandat 768.565 kb on - strandat 768.583 kb on + strandat 768.584 kb on - strandat 768.586 kb on - strandat 768.617 kb on + strandat 768.758 kb on - strandat 768.786 kb on + strandat 768.786 kb on + strandat 768.857 kb on - strandat 768.943 kb on + strandat 768.943 kb on + strandat 768.943 kb on + strandat 768.943 kb on + strandat 768.964 kb on + strandat 768.964 kb on + strandat 769.026 kb on - strandat 769.026 kb on - strandat 769.034 kb on + strandat 769.175 kb on + strand, within RR42_RS24260at 769.231 kb on + strand, within RR42_RS24260at 769.318 kb on - strand, within RR42_RS24260

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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766,779 + RR42_RS24250 0.18 -0.8
766,814 + RR42_RS24250 0.22 -1.0
766,814 + RR42_RS24250 0.22 +0.3
766,815 - RR42_RS24250 0.22 -0.3
766,858 + RR42_RS24250 0.26 -0.4
766,859 - RR42_RS24250 0.26 +1.2
766,859 - RR42_RS24250 0.26 +0.1
766,863 - RR42_RS24250 0.26 -0.7
766,988 + RR42_RS24250 0.38 -2.1
766,988 + RR42_RS24250 0.38 -1.9
767,018 - RR42_RS24250 0.40 +0.9
767,118 - RR42_RS24250 0.50 -1.2
767,252 + RR42_RS24250 0.62 -1.4
767,339 + RR42_RS24250 0.70 -0.4
767,339 + RR42_RS24250 0.70 -0.1
767,340 - RR42_RS24250 0.70 +0.2
767,367 + RR42_RS24250 0.72 -1.0
767,367 + RR42_RS24250 0.72 -0.8
767,367 + RR42_RS24250 0.72 -0.1
767,367 + RR42_RS24250 0.72 -0.8
767,368 - RR42_RS24250 0.73 -1.1
767,370 + RR42_RS24250 0.73 -0.3
767,371 - RR42_RS24250 0.73 -0.6
767,371 - RR42_RS24250 0.73 -1.3
767,391 + RR42_RS24250 0.75 -0.6
767,391 + RR42_RS24250 0.75 -0.8
767,391 + RR42_RS24250 0.75 -0.5
767,392 - RR42_RS24250 0.75 -0.3
767,392 - RR42_RS24250 0.75 -1.1
767,499 + RR42_RS24250 0.85 -1.0
767,525 + RR42_RS24250 0.87 -0.1
767,525 + RR42_RS24250 0.87 +1.3
767,525 + RR42_RS24250 0.87 +1.3
767,526 - RR42_RS24250 0.87 +0.3
767,526 - RR42_RS24250 0.87 +1.1
767,526 - RR42_RS24250 0.87 -1.1
767,528 + RR42_RS24250 0.87 -0.4
767,528 + RR42_RS24250 0.87 -0.5
767,625 - +0.3
767,625 - -0.7
767,671 + -0.6
767,672 - -1.2
767,672 - -0.5
767,672 - +0.9
767,706 + +1.1
767,706 + -0.4
767,706 + -0.2
767,706 + -0.2
767,706 + +0.0
767,707 - +1.1
767,707 - +1.3
767,707 - -0.1
767,707 - -0.6
767,718 + -0.3
767,815 - RR42_RS24255 0.16 +0.7
767,815 - RR42_RS24255 0.16 -1.1
767,815 - RR42_RS24255 0.16 -0.2
767,815 - RR42_RS24255 0.16 -0.3
767,815 - RR42_RS24255 0.16 +0.3
767,815 - RR42_RS24255 0.16 -0.2
767,815 - RR42_RS24255 0.16 -0.3
767,823 - RR42_RS24255 0.17 -0.5
768,019 + RR42_RS24255 0.37 +0.5
768,020 - RR42_RS24255 0.37 +1.1
768,080 + RR42_RS24255 0.44 -0.2
768,081 - RR42_RS24255 0.44 +0.1
768,155 + RR42_RS24255 0.51 +1.0
768,155 + RR42_RS24255 0.51 -1.2
768,155 + RR42_RS24255 0.51 -0.2
768,155 + RR42_RS24255 0.51 -0.8
768,156 - RR42_RS24255 0.52 -2.0
768,203 - RR42_RS24255 0.56 -0.6
768,227 + RR42_RS24255 0.59 -0.8
768,227 + RR42_RS24255 0.59 -1.1
768,227 + RR42_RS24255 0.59 -0.1
768,227 + RR42_RS24255 0.59 -1.0
768,227 + RR42_RS24255 0.59 -0.4
768,446 + RR42_RS24255 0.82 +1.1
768,446 + RR42_RS24255 0.82 -0.9
768,447 - RR42_RS24255 0.82 -0.7
768,447 - RR42_RS24255 0.82 -0.5
768,447 - RR42_RS24255 0.82 +0.2
768,447 - RR42_RS24255 0.82 +0.5
768,525 + -1.0
768,525 + +0.0
768,526 - +0.9
768,564 + -0.3
768,564 + -1.2
768,564 + +0.1
768,564 + +0.7
768,565 - -0.4
768,565 - -0.2
768,565 - +0.5
768,565 - +2.1
768,583 + +0.9
768,584 - -0.9
768,586 - +1.9
768,617 + +0.7
768,758 - -1.5
768,786 + +0.1
768,786 + -0.2
768,857 - -1.1
768,943 + +0.1
768,943 + -0.1
768,943 + -1.1
768,943 + -0.5
768,964 + -1.0
768,964 + -0.6
769,026 - -1.3
769,026 - -0.6
769,034 + +0.1
769,175 + RR42_RS24260 0.16 -1.0
769,231 + RR42_RS24260 0.24 +0.1
769,318 - RR42_RS24260 0.35 +0.9

Or see this region's nucleotide sequence