Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23470 and RR42_RS23475 are separated by 22 nucleotides RR42_RS23475 and RR42_RS23480 are separated by 324 nucleotides
RR42_RS23470: RR42_RS23470 - hypothetical protein, at 592,241 to 593,206
_RS23470
RR42_RS23475: RR42_RS23475 - IclR family transcriptional regulator, at 593,229 to 594,032
_RS23475
RR42_RS23480: RR42_RS23480 - 3-keto-5-aminohexanoate cleavage protein, at 594,357 to 595,190
_RS23480
Position (kb) 593
594
595 Strain fitness (log2 ratio) -2
-1
0
1
2 at 592.246 kb on + strand at 592.474 kb on - strand, within RR42_RS23470 at 592.474 kb on - strand, within RR42_RS23470 at 592.496 kb on + strand, within RR42_RS23470 at 592.496 kb on + strand, within RR42_RS23470 at 592.496 kb on + strand, within RR42_RS23470 at 592.498 kb on + strand, within RR42_RS23470 at 592.559 kb on + strand, within RR42_RS23470 at 592.698 kb on - strand, within RR42_RS23470 at 592.698 kb on - strand, within RR42_RS23470 at 592.698 kb on - strand, within RR42_RS23470 at 592.698 kb on - strand, within RR42_RS23470 at 592.784 kb on + strand, within RR42_RS23470 at 592.784 kb on + strand, within RR42_RS23470 at 592.972 kb on + strand, within RR42_RS23470 at 592.972 kb on + strand, within RR42_RS23470 at 592.972 kb on + strand, within RR42_RS23470 at 592.973 kb on - strand, within RR42_RS23470 at 593.040 kb on - strand, within RR42_RS23470 at 593.111 kb on - strand at 593.115 kb on + strand at 593.115 kb on + strand at 593.115 kb on + strand at 593.116 kb on - strand at 593.191 kb on + strand at 593.191 kb on + strand at 593.192 kb on - strand at 593.205 kb on - strand at 593.300 kb on - strand at 593.311 kb on + strand, within RR42_RS23475 at 593.358 kb on - strand, within RR42_RS23475 at 593.372 kb on + strand, within RR42_RS23475 at 593.442 kb on + strand, within RR42_RS23475 at 593.443 kb on - strand, within RR42_RS23475 at 593.614 kb on - strand, within RR42_RS23475 at 593.655 kb on - strand, within RR42_RS23475 at 593.657 kb on + strand, within RR42_RS23475 at 593.658 kb on - strand, within RR42_RS23475 at 593.675 kb on + strand, within RR42_RS23475 at 593.676 kb on - strand, within RR42_RS23475 at 593.710 kb on - strand, within RR42_RS23475 at 593.841 kb on + strand, within RR42_RS23475 at 593.841 kb on + strand, within RR42_RS23475 at 593.913 kb on + strand, within RR42_RS23475 at 593.913 kb on + strand, within RR42_RS23475 at 593.913 kb on + strand, within RR42_RS23475 at 593.913 kb on + strand, within RR42_RS23475 at 593.914 kb on - strand, within RR42_RS23475 at 593.914 kb on - strand, within RR42_RS23475 at 594.121 kb on + strand at 594.122 kb on - strand at 594.122 kb on - strand at 594.245 kb on + strand at 594.246 kb on - strand at 594.249 kb on + strand at 594.249 kb on + strand at 594.249 kb on + strand at 594.249 kb on + strand at 594.330 kb on + strand at 594.330 kb on + strand at 594.331 kb on - strand at 594.331 kb on - strand at 594.342 kb on + strand at 594.342 kb on + strand at 594.343 kb on - strand at 594.343 kb on - strand at 594.350 kb on + strand at 594.350 kb on + strand at 594.480 kb on - strand, within RR42_RS23480 at 594.480 kb on - strand, within RR42_RS23480 at 594.628 kb on + strand, within RR42_RS23480 at 594.750 kb on + strand, within RR42_RS23480 at 594.751 kb on - strand, within RR42_RS23480 at 594.751 kb on - strand, within RR42_RS23480 at 594.751 kb on - strand, within RR42_RS23480 at 594.785 kb on - strand, within RR42_RS23480 at 594.954 kb on - strand, within RR42_RS23480 at 594.991 kb on - strand, within RR42_RS23480
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 592,246 + +0.2 592,474 - RR42_RS23470 0.24 -0.9 592,474 - RR42_RS23470 0.24 -1.6 592,496 + RR42_RS23470 0.26 -0.4 592,496 + RR42_RS23470 0.26 -0.5 592,496 + RR42_RS23470 0.26 +1.6 592,498 + RR42_RS23470 0.27 -0.2 592,559 + RR42_RS23470 0.33 -0.2 592,698 - RR42_RS23470 0.47 -0.7 592,698 - RR42_RS23470 0.47 -0.8 592,698 - RR42_RS23470 0.47 -1.3 592,698 - RR42_RS23470 0.47 -0.6 592,784 + RR42_RS23470 0.56 -1.3 592,784 + RR42_RS23470 0.56 +0.3 592,972 + RR42_RS23470 0.76 -1.6 592,972 + RR42_RS23470 0.76 +0.7 592,972 + RR42_RS23470 0.76 +0.6 592,973 - RR42_RS23470 0.76 +0.1 593,040 - RR42_RS23470 0.83 +0.0 593,111 - +1.4 593,115 + -1.0 593,115 + -2.5 593,115 + -0.9 593,116 - -0.3 593,191 + +0.3 593,191 + -0.6 593,192 - -0.6 593,205 - +0.7 593,300 - -0.6 593,311 + RR42_RS23475 0.10 -0.6 593,358 - RR42_RS23475 0.16 -0.3 593,372 + RR42_RS23475 0.18 +0.1 593,442 + RR42_RS23475 0.26 +0.5 593,443 - RR42_RS23475 0.27 +1.0 593,614 - RR42_RS23475 0.48 -0.2 593,655 - RR42_RS23475 0.53 -0.4 593,657 + RR42_RS23475 0.53 -0.2 593,658 - RR42_RS23475 0.53 -0.3 593,675 + RR42_RS23475 0.55 +0.5 593,676 - RR42_RS23475 0.56 -0.3 593,710 - RR42_RS23475 0.60 +0.0 593,841 + RR42_RS23475 0.76 -0.8 593,841 + RR42_RS23475 0.76 -1.1 593,913 + RR42_RS23475 0.85 -0.0 593,913 + RR42_RS23475 0.85 -1.3 593,913 + RR42_RS23475 0.85 -0.7 593,913 + RR42_RS23475 0.85 -0.1 593,914 - RR42_RS23475 0.85 -1.0 593,914 - RR42_RS23475 0.85 +0.5 594,121 + -0.4 594,122 - -1.3 594,122 - -0.3 594,245 + -0.6 594,246 - +1.0 594,249 + -1.2 594,249 + -0.3 594,249 + +2.0 594,249 + -0.0 594,330 + +0.6 594,330 + -1.0 594,331 - +0.4 594,331 - -0.8 594,342 + -0.3 594,342 + -0.4 594,343 - -0.9 594,343 - +1.0 594,350 + +0.3 594,350 + -0.1 594,480 - RR42_RS23480 0.15 -1.0 594,480 - RR42_RS23480 0.15 -1.0 594,628 + RR42_RS23480 0.32 -0.4 594,750 + RR42_RS23480 0.47 -1.7 594,751 - RR42_RS23480 0.47 -1.6 594,751 - RR42_RS23480 0.47 +1.0 594,751 - RR42_RS23480 0.47 -0.7 594,785 - RR42_RS23480 0.51 +1.4 594,954 - RR42_RS23480 0.72 +0.0 594,991 - RR42_RS23480 0.76 +0.0
Or see this region's nucleotide sequence