Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23055 and RR42_RS23060 are separated by 205 nucleotides RR42_RS23060 and RR42_RS23065 are separated by 158 nucleotides
RR42_RS23055: RR42_RS23055 - ABC transporter substrate-binding protein, at 506,781 to 507,728
_RS23055
RR42_RS23060: RR42_RS23060 - hypothetical protein, at 507,934 to 508,926
_RS23060
RR42_RS23065: RR42_RS23065 - L-rhamnose 1-epimerase, at 509,085 to 510,260
_RS23065
Position (kb) 507
508
509 Strain fitness (log2 ratio) -2
-1
0
1
2 at 506.994 kb on + strand, within RR42_RS23055 at 507.023 kb on + strand, within RR42_RS23055 at 507.023 kb on + strand, within RR42_RS23055 at 507.024 kb on - strand, within RR42_RS23055 at 507.024 kb on - strand, within RR42_RS23055 at 507.084 kb on + strand, within RR42_RS23055 at 507.084 kb on + strand, within RR42_RS23055 at 507.161 kb on - strand, within RR42_RS23055 at 507.223 kb on - strand, within RR42_RS23055 at 507.268 kb on + strand, within RR42_RS23055 at 507.309 kb on + strand, within RR42_RS23055 at 507.413 kb on - strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.628 kb on - strand, within RR42_RS23055 at 507.628 kb on - strand, within RR42_RS23055 at 507.973 kb on + strand at 507.974 kb on - strand at 507.974 kb on - strand at 508.044 kb on - strand, within RR42_RS23060 at 508.282 kb on + strand, within RR42_RS23060 at 508.294 kb on + strand, within RR42_RS23060 at 508.294 kb on + strand, within RR42_RS23060 at 508.363 kb on + strand, within RR42_RS23060 at 508.363 kb on + strand, within RR42_RS23060 at 508.396 kb on + strand, within RR42_RS23060 at 508.495 kb on - strand, within RR42_RS23060 at 508.642 kb on + strand, within RR42_RS23060 at 508.832 kb on - strand at 508.832 kb on - strand at 508.832 kb on - strand at 508.892 kb on + strand at 508.892 kb on + strand at 508.892 kb on + strand at 509.093 kb on + strand at 509.093 kb on + strand at 509.113 kb on + strand at 509.114 kb on - strand at 509.114 kb on - strand at 509.167 kb on + strand at 509.168 kb on - strand at 509.203 kb on + strand, within RR42_RS23065 at 509.204 kb on - strand, within RR42_RS23065 at 509.204 kb on - strand, within RR42_RS23065 at 509.204 kb on - strand, within RR42_RS23065 at 509.204 kb on - strand, within RR42_RS23065 at 509.206 kb on + strand, within RR42_RS23065 at 509.206 kb on + strand, within RR42_RS23065 at 509.290 kb on + strand, within RR42_RS23065 at 509.290 kb on + strand, within RR42_RS23065 at 509.290 kb on + strand, within RR42_RS23065 at 509.290 kb on + strand, within RR42_RS23065 at 509.291 kb on - strand, within RR42_RS23065 at 509.291 kb on - strand, within RR42_RS23065 at 509.395 kb on + strand, within RR42_RS23065 at 509.443 kb on + strand, within RR42_RS23065 at 509.443 kb on + strand, within RR42_RS23065 at 509.506 kb on + strand, within RR42_RS23065 at 509.609 kb on + strand, within RR42_RS23065 at 509.610 kb on - strand, within RR42_RS23065 at 509.611 kb on + strand, within RR42_RS23065 at 509.611 kb on + strand, within RR42_RS23065 at 509.611 kb on + strand, within RR42_RS23065 at 509.611 kb on + strand, within RR42_RS23065 at 509.611 kb on + strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.755 kb on + strand, within RR42_RS23065 at 509.755 kb on + strand, within RR42_RS23065 at 509.756 kb on - strand, within RR42_RS23065 at 509.801 kb on - strand, within RR42_RS23065 at 509.801 kb on - strand, within RR42_RS23065 at 509.815 kb on + strand, within RR42_RS23065 at 509.815 kb on + strand, within RR42_RS23065 at 509.815 kb on + strand, within RR42_RS23065 at 509.815 kb on + strand, within RR42_RS23065 at 509.816 kb on - strand, within RR42_RS23065 at 509.816 kb on - strand, within RR42_RS23065 at 509.816 kb on - strand, within RR42_RS23065
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 506,994 + RR42_RS23055 0.22 +0.4 507,023 + RR42_RS23055 0.26 -0.1 507,023 + RR42_RS23055 0.26 -0.4 507,024 - RR42_RS23055 0.26 -0.6 507,024 - RR42_RS23055 0.26 +1.0 507,084 + RR42_RS23055 0.32 -1.1 507,084 + RR42_RS23055 0.32 -0.1 507,161 - RR42_RS23055 0.40 +0.8 507,223 - RR42_RS23055 0.47 +0.3 507,268 + RR42_RS23055 0.51 +0.9 507,309 + RR42_RS23055 0.56 +0.1 507,413 - RR42_RS23055 0.67 -0.5 507,627 + RR42_RS23055 0.89 +1.6 507,627 + RR42_RS23055 0.89 -0.2 507,627 + RR42_RS23055 0.89 -1.7 507,628 - RR42_RS23055 0.89 -0.1 507,628 - RR42_RS23055 0.89 +2.6 507,973 + +0.3 507,974 - +0.5 507,974 - -0.1 508,044 - RR42_RS23060 0.11 +0.9 508,282 + RR42_RS23060 0.35 -0.9 508,294 + RR42_RS23060 0.36 +0.6 508,294 + RR42_RS23060 0.36 +0.6 508,363 + RR42_RS23060 0.43 +2.3 508,363 + RR42_RS23060 0.43 -1.0 508,396 + RR42_RS23060 0.47 +1.3 508,495 - RR42_RS23060 0.56 +0.6 508,642 + RR42_RS23060 0.71 -0.6 508,832 - -0.0 508,832 - -0.2 508,832 - +0.6 508,892 + +0.3 508,892 + +0.6 508,892 + +0.7 509,093 + +0.8 509,093 + +1.1 509,113 + +0.2 509,114 - +2.6 509,114 - -0.2 509,167 + +0.5 509,168 - +1.1 509,203 + RR42_RS23065 0.10 -0.8 509,204 - RR42_RS23065 0.10 +1.2 509,204 - RR42_RS23065 0.10 +1.2 509,204 - RR42_RS23065 0.10 -1.4 509,204 - RR42_RS23065 0.10 +0.1 509,206 + RR42_RS23065 0.10 +0.1 509,206 + RR42_RS23065 0.10 +0.0 509,290 + RR42_RS23065 0.17 +0.4 509,290 + RR42_RS23065 0.17 -0.9 509,290 + RR42_RS23065 0.17 +0.8 509,290 + RR42_RS23065 0.17 -0.4 509,291 - RR42_RS23065 0.18 -0.6 509,291 - RR42_RS23065 0.18 -1.6 509,395 + RR42_RS23065 0.26 +1.1 509,443 + RR42_RS23065 0.30 +0.2 509,443 + RR42_RS23065 0.30 +1.4 509,506 + RR42_RS23065 0.36 -0.8 509,609 + RR42_RS23065 0.45 -1.1 509,610 - RR42_RS23065 0.45 -0.6 509,611 + RR42_RS23065 0.45 +0.6 509,611 + RR42_RS23065 0.45 +0.5 509,611 + RR42_RS23065 0.45 +0.9 509,611 + RR42_RS23065 0.45 -2.7 509,611 + RR42_RS23065 0.45 +0.3 509,612 - RR42_RS23065 0.45 +0.9 509,612 - RR42_RS23065 0.45 +2.1 509,612 - RR42_RS23065 0.45 +0.6 509,612 - RR42_RS23065 0.45 +0.6 509,612 - RR42_RS23065 0.45 -0.5 509,612 - RR42_RS23065 0.45 -0.5 509,612 - RR42_RS23065 0.45 +0.5 509,612 - RR42_RS23065 0.45 -0.4 509,755 + RR42_RS23065 0.57 +0.2 509,755 + RR42_RS23065 0.57 -1.7 509,756 - RR42_RS23065 0.57 +0.1 509,801 - RR42_RS23065 0.61 -1.1 509,801 - RR42_RS23065 0.61 +0.5 509,815 + RR42_RS23065 0.62 +0.3 509,815 + RR42_RS23065 0.62 +0.3 509,815 + RR42_RS23065 0.62 +0.6 509,815 + RR42_RS23065 0.62 +0.3 509,816 - RR42_RS23065 0.62 +0.4 509,816 - RR42_RS23065 0.62 -0.9 509,816 - RR42_RS23065 0.62 +1.3
Or see this region's nucleotide sequence