Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22885

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22875 and RR42_RS22880 overlap by 4 nucleotidesRR42_RS22880 and RR42_RS22885 are separated by 1 nucleotidesRR42_RS22885 and RR42_RS22890 are separated by 129 nucleotides RR42_RS22875: RR42_RS22875 - ABC transporter, at 463,981 to 465,036 _RS22875 RR42_RS22880: RR42_RS22880 - ABC transporter permease, at 465,033 to 465,938 _RS22880 RR42_RS22885: RR42_RS22885 - sugar ABC transporter permease, at 465,940 to 466,806 _RS22885 RR42_RS22890: RR42_RS22890 - TetR family transcriptional regulator, at 466,936 to 467,667 _RS22890 Position (kb) 465 466 467Strain fitness (log2 ratio) -2 -1 0 1 2at 465.111 kb on + strandat 465.111 kb on + strandat 465.112 kb on - strandat 465.153 kb on + strand, within RR42_RS22880at 465.153 kb on + strand, within RR42_RS22880at 465.153 kb on + strand, within RR42_RS22880at 465.156 kb on + strand, within RR42_RS22880at 465.156 kb on + strand, within RR42_RS22880at 465.156 kb on + strand, within RR42_RS22880at 465.157 kb on - strand, within RR42_RS22880at 465.157 kb on - strand, within RR42_RS22880at 465.678 kb on - strand, within RR42_RS22880at 465.780 kb on + strand, within RR42_RS22880at 465.780 kb on + strand, within RR42_RS22880at 465.781 kb on - strand, within RR42_RS22880at 466.048 kb on + strand, within RR42_RS22885at 466.049 kb on - strand, within RR42_RS22885at 466.049 kb on - strand, within RR42_RS22885at 466.049 kb on - strand, within RR42_RS22885at 466.049 kb on - strand, within RR42_RS22885at 466.171 kb on + strand, within RR42_RS22885at 466.171 kb on + strand, within RR42_RS22885at 466.171 kb on + strand, within RR42_RS22885at 466.316 kb on - strand, within RR42_RS22885at 466.408 kb on + strand, within RR42_RS22885at 466.569 kb on - strand, within RR42_RS22885at 466.574 kb on + strand, within RR42_RS22885at 466.627 kb on - strand, within RR42_RS22885at 466.627 kb on - strand, within RR42_RS22885at 466.627 kb on - strand, within RR42_RS22885at 466.690 kb on + strand, within RR42_RS22885at 466.691 kb on - strand, within RR42_RS22885at 466.751 kb on - strandat 466.786 kb on - strandat 467.033 kb on + strand, within RR42_RS22890at 467.033 kb on + strand, within RR42_RS22890at 467.034 kb on - strand, within RR42_RS22890at 467.124 kb on - strand, within RR42_RS22890at 467.141 kb on + strand, within RR42_RS22890at 467.142 kb on - strand, within RR42_RS22890at 467.166 kb on + strand, within RR42_RS22890at 467.166 kb on + strand, within RR42_RS22890at 467.166 kb on + strand, within RR42_RS22890at 467.166 kb on + strand, within RR42_RS22890at 467.170 kb on + strand, within RR42_RS22890at 467.171 kb on - strand, within RR42_RS22890at 467.171 kb on - strand, within RR42_RS22890at 467.495 kb on + strand, within RR42_RS22890at 467.495 kb on + strand, within RR42_RS22890at 467.502 kb on - strand, within RR42_RS22890at 467.752 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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465,111 + -0.1
465,111 + +0.3
465,112 - -0.2
465,153 + RR42_RS22880 0.13 -1.0
465,153 + RR42_RS22880 0.13 +0.8
465,153 + RR42_RS22880 0.13 -1.4
465,156 + RR42_RS22880 0.14 +0.9
465,156 + RR42_RS22880 0.14 +0.3
465,156 + RR42_RS22880 0.14 +1.3
465,157 - RR42_RS22880 0.14 -0.8
465,157 - RR42_RS22880 0.14 +1.6
465,678 - RR42_RS22880 0.71 -0.7
465,780 + RR42_RS22880 0.82 +1.0
465,780 + RR42_RS22880 0.82 +0.1
465,781 - RR42_RS22880 0.83 +0.6
466,048 + RR42_RS22885 0.12 -0.7
466,049 - RR42_RS22885 0.13 -0.1
466,049 - RR42_RS22885 0.13 -0.8
466,049 - RR42_RS22885 0.13 -1.0
466,049 - RR42_RS22885 0.13 +0.0
466,171 + RR42_RS22885 0.27 -2.0
466,171 + RR42_RS22885 0.27 +1.0
466,171 + RR42_RS22885 0.27 -0.0
466,316 - RR42_RS22885 0.43 -1.0
466,408 + RR42_RS22885 0.54 +0.2
466,569 - RR42_RS22885 0.73 +0.1
466,574 + RR42_RS22885 0.73 -0.5
466,627 - RR42_RS22885 0.79 -0.6
466,627 - RR42_RS22885 0.79 +0.9
466,627 - RR42_RS22885 0.79 -0.0
466,690 + RR42_RS22885 0.87 +2.6
466,691 - RR42_RS22885 0.87 +0.3
466,751 - +0.5
466,786 - +0.0
467,033 + RR42_RS22890 0.13 +0.8
467,033 + RR42_RS22890 0.13 +0.7
467,034 - RR42_RS22890 0.13 -0.5
467,124 - RR42_RS22890 0.26 +0.0
467,141 + RR42_RS22890 0.28 +1.9
467,142 - RR42_RS22890 0.28 +0.6
467,166 + RR42_RS22890 0.31 -0.4
467,166 + RR42_RS22890 0.31 +0.3
467,166 + RR42_RS22890 0.31 -0.6
467,166 + RR42_RS22890 0.31 +2.3
467,170 + RR42_RS22890 0.32 -0.5
467,171 - RR42_RS22890 0.32 +0.1
467,171 - RR42_RS22890 0.32 +1.6
467,495 + RR42_RS22890 0.76 -0.0
467,495 + RR42_RS22890 0.76 -0.6
467,502 - RR42_RS22890 0.77 +1.0
467,752 + -0.0

Or see this region's nucleotide sequence