Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22450 and RR42_RS22455 are separated by 0 nucleotides RR42_RS22455 and RR42_RS22460 are separated by 146 nucleotides RR42_RS22460 and RR42_RS22465 are separated by 67 nucleotides
RR42_RS22450: RR42_RS22450 - phosphonopyruvate decarboxylase, at 372,781 to 373,962
_RS22450
RR42_RS22455: RR42_RS22455 - 2-aminoethylphosphonate aminotransferase, at 373,963 to 375,027
_RS22455
RR42_RS22460: RR42_RS22460 - ABC transporter, at 375,174 to 375,872
_RS22460
RR42_RS22465: RR42_RS22465 - membrane protein, at 375,940 to 377,994
_RS22465
Position (kb) 373
374
375
376 Strain fitness (log2 ratio) -2
-1
0
1
2 at 373.233 kb on + strand, within RR42_RS22450 at 373.233 kb on + strand, within RR42_RS22450 at 373.234 kb on - strand, within RR42_RS22450 at 373.234 kb on - strand, within RR42_RS22450 at 373.256 kb on - strand, within RR42_RS22450 at 373.416 kb on + strand, within RR42_RS22450 at 373.504 kb on + strand, within RR42_RS22450 at 373.504 kb on + strand, within RR42_RS22450 at 373.505 kb on - strand, within RR42_RS22450 at 373.505 kb on - strand, within RR42_RS22450 at 373.642 kb on + strand, within RR42_RS22450 at 373.642 kb on + strand, within RR42_RS22450 at 373.960 kb on + strand at 373.960 kb on + strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.970 kb on + strand at 373.970 kb on + strand at 373.971 kb on - strand at 374.098 kb on + strand, within RR42_RS22455 at 374.098 kb on + strand, within RR42_RS22455 at 374.098 kb on + strand, within RR42_RS22455 at 374.098 kb on + strand, within RR42_RS22455 at 374.098 kb on + strand, within RR42_RS22455 at 374.099 kb on - strand, within RR42_RS22455 at 374.099 kb on - strand, within RR42_RS22455 at 374.099 kb on - strand, within RR42_RS22455 at 374.257 kb on + strand, within RR42_RS22455 at 374.438 kb on + strand, within RR42_RS22455 at 374.438 kb on + strand, within RR42_RS22455 at 374.438 kb on + strand, within RR42_RS22455 at 374.439 kb on - strand, within RR42_RS22455 at 374.439 kb on - strand, within RR42_RS22455 at 374.439 kb on - strand, within RR42_RS22455 at 374.605 kb on + strand, within RR42_RS22455 at 374.605 kb on + strand, within RR42_RS22455 at 374.606 kb on - strand, within RR42_RS22455 at 374.608 kb on + strand, within RR42_RS22455 at 374.608 kb on + strand, within RR42_RS22455 at 374.652 kb on + strand, within RR42_RS22455 at 374.652 kb on + strand, within RR42_RS22455 at 374.661 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.673 kb on - strand, within RR42_RS22455 at 374.680 kb on + strand, within RR42_RS22455 at 374.680 kb on + strand, within RR42_RS22455 at 374.681 kb on - strand, within RR42_RS22455 at 374.681 kb on - strand, within RR42_RS22455 at 374.681 kb on - strand, within RR42_RS22455 at 374.683 kb on + strand, within RR42_RS22455 at 374.870 kb on - strand, within RR42_RS22455 at 374.914 kb on + strand, within RR42_RS22455 at 374.915 kb on - strand, within RR42_RS22455 at 374.915 kb on - strand, within RR42_RS22455 at 374.915 kb on - strand, within RR42_RS22455 at 374.915 kb on - strand, within RR42_RS22455 at 374.933 kb on + strand at 374.970 kb on + strand at 375.026 kb on - strand at 375.050 kb on + strand at 375.101 kb on + strand at 375.101 kb on + strand at 375.102 kb on - strand at 375.102 kb on - strand at 375.102 kb on - strand at 375.102 kb on - strand at 375.102 kb on - strand at 375.107 kb on + strand at 375.107 kb on + strand at 375.108 kb on - strand at 375.108 kb on - strand at 375.260 kb on + strand, within RR42_RS22460 at 375.471 kb on + strand, within RR42_RS22460 at 375.472 kb on - strand, within RR42_RS22460 at 375.664 kb on + strand, within RR42_RS22460 at 375.664 kb on + strand, within RR42_RS22460 at 375.664 kb on + strand, within RR42_RS22460 at 375.665 kb on - strand, within RR42_RS22460 at 375.665 kb on - strand, within RR42_RS22460 at 375.761 kb on + strand, within RR42_RS22460 at 375.761 kb on + strand, within RR42_RS22460 at 375.762 kb on - strand, within RR42_RS22460 at 375.847 kb on - strand at 375.847 kb on - strand at 375.860 kb on + strand at 375.861 kb on - strand at 375.875 kb on + strand at 375.887 kb on + strand at 375.887 kb on + strand at 375.887 kb on + strand at 375.887 kb on + strand at 375.888 kb on - strand at 375.888 kb on - strand at 375.925 kb on + strand at 375.925 kb on + strand at 375.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 373,233 + RR42_RS22450 0.38 +1.2 373,233 + RR42_RS22450 0.38 -0.6 373,234 - RR42_RS22450 0.38 +0.1 373,234 - RR42_RS22450 0.38 -0.4 373,256 - RR42_RS22450 0.40 -1.1 373,416 + RR42_RS22450 0.54 +0.5 373,504 + RR42_RS22450 0.61 +0.3 373,504 + RR42_RS22450 0.61 -1.9 373,505 - RR42_RS22450 0.61 -0.9 373,505 - RR42_RS22450 0.61 -0.8 373,642 + RR42_RS22450 0.73 -0.4 373,642 + RR42_RS22450 0.73 +0.0 373,960 + -0.4 373,960 + -0.6 373,961 - -0.6 373,961 - -1.1 373,961 - -1.4 373,961 - +0.1 373,970 + -0.1 373,970 + -0.6 373,971 - +0.8 374,098 + RR42_RS22455 0.13 -0.3 374,098 + RR42_RS22455 0.13 +1.7 374,098 + RR42_RS22455 0.13 -1.8 374,098 + RR42_RS22455 0.13 -0.1 374,098 + RR42_RS22455 0.13 -1.1 374,099 - RR42_RS22455 0.13 -1.3 374,099 - RR42_RS22455 0.13 -1.1 374,099 - RR42_RS22455 0.13 -0.9 374,257 + RR42_RS22455 0.28 +0.7 374,438 + RR42_RS22455 0.45 -1.2 374,438 + RR42_RS22455 0.45 -0.7 374,438 + RR42_RS22455 0.45 -0.5 374,439 - RR42_RS22455 0.45 +0.2 374,439 - RR42_RS22455 0.45 +0.5 374,439 - RR42_RS22455 0.45 +0.5 374,605 + RR42_RS22455 0.60 -0.2 374,605 + RR42_RS22455 0.60 -0.1 374,606 - RR42_RS22455 0.60 -1.0 374,608 + RR42_RS22455 0.61 -0.8 374,608 + RR42_RS22455 0.61 -0.2 374,652 + RR42_RS22455 0.65 -0.3 374,652 + RR42_RS22455 0.65 +0.3 374,661 + RR42_RS22455 0.66 -1.4 374,672 + RR42_RS22455 0.67 -0.9 374,672 + RR42_RS22455 0.67 -0.5 374,672 + RR42_RS22455 0.67 -0.8 374,672 + RR42_RS22455 0.67 -0.2 374,672 + RR42_RS22455 0.67 +0.9 374,672 + RR42_RS22455 0.67 -0.5 374,673 - RR42_RS22455 0.67 -0.4 374,680 + RR42_RS22455 0.67 -1.0 374,680 + RR42_RS22455 0.67 -0.3 374,681 - RR42_RS22455 0.67 -1.0 374,681 - RR42_RS22455 0.67 -1.1 374,681 - RR42_RS22455 0.67 -0.5 374,683 + RR42_RS22455 0.68 -0.8 374,870 - RR42_RS22455 0.85 -0.7 374,914 + RR42_RS22455 0.89 +0.1 374,915 - RR42_RS22455 0.89 +0.2 374,915 - RR42_RS22455 0.89 +2.7 374,915 - RR42_RS22455 0.89 +0.3 374,915 - RR42_RS22455 0.89 +0.3 374,933 + -0.3 374,970 + -1.2 375,026 - -0.4 375,050 + -0.3 375,101 + -0.4 375,101 + +0.6 375,102 - +1.1 375,102 - +0.2 375,102 - -0.2 375,102 - +0.7 375,102 - -0.3 375,107 + +0.1 375,107 + -0.0 375,108 - -1.0 375,108 - -0.2 375,260 + RR42_RS22460 0.12 -0.6 375,471 + RR42_RS22460 0.42 +0.1 375,472 - RR42_RS22460 0.43 +0.5 375,664 + RR42_RS22460 0.70 -0.9 375,664 + RR42_RS22460 0.70 +1.7 375,664 + RR42_RS22460 0.70 +2.7 375,665 - RR42_RS22460 0.70 -0.1 375,665 - RR42_RS22460 0.70 +0.7 375,761 + RR42_RS22460 0.84 +0.3 375,761 + RR42_RS22460 0.84 -0.2 375,762 - RR42_RS22460 0.84 +0.3 375,847 - +0.3 375,847 - -0.3 375,860 + -0.0 375,861 - -1.0 375,875 + -0.3 375,887 + -1.0 375,887 + -0.1 375,887 + -1.9 375,887 + +0.3 375,888 - +1.3 375,888 - -0.7 375,925 + -0.3 375,925 + -0.5 375,933 + +0.1
Or see this region's nucleotide sequence