Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21340 and RR42_RS21345 are separated by 192 nucleotides RR42_RS21345 and RR42_RS21350 are separated by 119 nucleotides
RR42_RS21340: RR42_RS21340 - DNA-binding protein, at 115,501 to 117,084
_RS21340
RR42_RS21345: RR42_RS21345 - acetylornithine deacetylase, at 117,277 to 118,626
_RS21345
RR42_RS21350: RR42_RS21350 - peptide ABC transporter substrate-binding protein, at 118,746 to 120,308
_RS21350
Position (kb) 117
118
119 Strain fitness (log2 ratio) -2
-1
0
1 at 116.379 kb on - strand, within RR42_RS21340 at 116.379 kb on - strand, within RR42_RS21340 at 116.544 kb on - strand, within RR42_RS21340 at 116.561 kb on + strand, within RR42_RS21340 at 116.561 kb on + strand, within RR42_RS21340 at 116.561 kb on + strand, within RR42_RS21340 at 116.561 kb on + strand, within RR42_RS21340 at 116.562 kb on - strand, within RR42_RS21340 at 116.562 kb on - strand, within RR42_RS21340 at 116.802 kb on + strand, within RR42_RS21340 at 116.803 kb on - strand, within RR42_RS21340 at 116.858 kb on + strand, within RR42_RS21340 at 116.915 kb on - strand, within RR42_RS21340 at 116.999 kb on + strand at 117.000 kb on - strand at 117.132 kb on + strand at 117.132 kb on + strand at 117.136 kb on + strand at 117.136 kb on + strand at 117.276 kb on + strand at 117.276 kb on + strand at 117.276 kb on + strand at 117.277 kb on - strand at 117.277 kb on - strand at 117.277 kb on - strand at 117.277 kb on - strand at 117.295 kb on - strand at 117.304 kb on - strand at 117.304 kb on - strand at 117.304 kb on - strand at 117.313 kb on - strand at 117.376 kb on + strand at 117.376 kb on + strand at 117.387 kb on + strand at 117.496 kb on + strand, within RR42_RS21345 at 117.565 kb on + strand, within RR42_RS21345 at 117.566 kb on - strand, within RR42_RS21345 at 117.566 kb on - strand, within RR42_RS21345 at 117.566 kb on - strand, within RR42_RS21345 at 117.679 kb on + strand, within RR42_RS21345 at 117.764 kb on - strand, within RR42_RS21345 at 117.765 kb on + strand, within RR42_RS21345 at 118.015 kb on + strand, within RR42_RS21345 at 118.015 kb on + strand, within RR42_RS21345 at 118.015 kb on + strand, within RR42_RS21345 at 118.016 kb on - strand, within RR42_RS21345 at 118.327 kb on + strand, within RR42_RS21345 at 118.608 kb on - strand at 118.608 kb on - strand at 118.899 kb on + strand at 119.004 kb on + strand, within RR42_RS21350 at 119.004 kb on + strand, within RR42_RS21350 at 119.005 kb on - strand, within RR42_RS21350 at 119.005 kb on - strand, within RR42_RS21350 at 119.005 kb on - strand, within RR42_RS21350 at 119.006 kb on + strand, within RR42_RS21350 at 119.133 kb on + strand, within RR42_RS21350 at 119.133 kb on + strand, within RR42_RS21350 at 119.134 kb on - strand, within RR42_RS21350 at 119.134 kb on - strand, within RR42_RS21350 at 119.254 kb on - strand, within RR42_RS21350 at 119.344 kb on - strand, within RR42_RS21350 at 119.345 kb on + strand, within RR42_RS21350 at 119.413 kb on - strand, within RR42_RS21350 at 119.413 kb on - strand, within RR42_RS21350
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 116,379 - RR42_RS21340 0.55 +0.2 116,379 - RR42_RS21340 0.55 +0.4 116,544 - RR42_RS21340 0.66 -0.1 116,561 + RR42_RS21340 0.67 -1.2 116,561 + RR42_RS21340 0.67 +1.1 116,561 + RR42_RS21340 0.67 -0.7 116,561 + RR42_RS21340 0.67 -0.6 116,562 - RR42_RS21340 0.67 +0.1 116,562 - RR42_RS21340 0.67 +0.4 116,802 + RR42_RS21340 0.82 -1.1 116,803 - RR42_RS21340 0.82 +0.1 116,858 + RR42_RS21340 0.86 -0.3 116,915 - RR42_RS21340 0.89 -1.3 116,999 + -0.2 117,000 - -0.4 117,132 + -1.0 117,132 + +0.2 117,136 + -1.6 117,136 + +0.9 117,276 + +0.6 117,276 + -0.8 117,276 + +0.2 117,277 - -2.1 117,277 - +0.3 117,277 - +1.2 117,277 - -0.0 117,295 - +0.3 117,304 - -0.9 117,304 - -0.3 117,304 - +1.0 117,313 - +0.8 117,376 + -1.6 117,376 + +1.2 117,387 + +0.6 117,496 + RR42_RS21345 0.16 -0.8 117,565 + RR42_RS21345 0.21 -0.7 117,566 - RR42_RS21345 0.21 +0.3 117,566 - RR42_RS21345 0.21 +1.4 117,566 - RR42_RS21345 0.21 -0.0 117,679 + RR42_RS21345 0.30 -1.0 117,764 - RR42_RS21345 0.36 -0.0 117,765 + RR42_RS21345 0.36 -0.3 118,015 + RR42_RS21345 0.55 -0.5 118,015 + RR42_RS21345 0.55 -0.6 118,015 + RR42_RS21345 0.55 -0.9 118,016 - RR42_RS21345 0.55 +0.2 118,327 + RR42_RS21345 0.78 -1.7 118,608 - -1.2 118,608 - -0.5 118,899 + -0.4 119,004 + RR42_RS21350 0.17 +0.9 119,004 + RR42_RS21350 0.17 +0.8 119,005 - RR42_RS21350 0.17 -0.1 119,005 - RR42_RS21350 0.17 +0.4 119,005 - RR42_RS21350 0.17 -0.4 119,006 + RR42_RS21350 0.17 +0.2 119,133 + RR42_RS21350 0.25 -0.4 119,133 + RR42_RS21350 0.25 +0.9 119,134 - RR42_RS21350 0.25 -0.8 119,134 - RR42_RS21350 0.25 +1.0 119,254 - RR42_RS21350 0.33 +0.3 119,344 - RR42_RS21350 0.38 -0.1 119,345 + RR42_RS21350 0.38 +0.6 119,413 - RR42_RS21350 0.43 -1.2 119,413 - RR42_RS21350 0.43 +0.7
Or see this region's nucleotide sequence