Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18345

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
3,974,211	-		RR42_RS18340	0.64	-0.6
3,974,211	-		RR42_RS18340	0.64	+0.4
3,974,225	+		RR42_RS18340	0.65	+0.2
3,974,225	+		RR42_RS18340	0.65	-0.7
3,974,226	-		RR42_RS18340	0.65	+0.6
3,974,253	-		RR42_RS18340	0.66	-0.2
3,974,372	+		RR42_RS18340	0.71	-0.8
3,974,372	+		RR42_RS18340	0.71	-1.7
3,974,373	-				+2.6
3,974,373	-		RR42_RS18340	0.71	-0.8
3,974,373	-		RR42_RS18340	0.71	+0.2
3,974,373	-		RR42_RS18340	0.71	-0.6
3,974,378	+		RR42_RS18340	0.71	-0.2
3,974,427	+		RR42_RS18340	0.73	+0.3
3,974,428	-		RR42_RS18340	0.73	-1.9
3,974,522	+		RR42_RS18340	0.77	+0.6
3,974,541	-		RR42_RS18340	0.77	-0.8
3,974,580	-		RR42_RS18340	0.79	-0.3
3,974,622	+		RR42_RS18340	0.81	+0.7
3,974,645	+		RR42_RS18340	0.82	+1.5
3,974,645	+		RR42_RS18340	0.82	+1.6
3,974,645	+		RR42_RS18340	0.82	+0.8
3,974,652	+		RR42_RS18340	0.82	-1.7
3,974,653	-		RR42_RS18340	0.82	+0.8
3,974,653	-		RR42_RS18340	0.82	+0.1
3,974,653	-		RR42_RS18340	0.82	-0.3
3,974,654	+		RR42_RS18340	0.82	-0.3
3,974,655	-		RR42_RS18340	0.82	-0.1
3,974,655	-		RR42_RS18340	0.82	-1.0
3,974,655	-		RR42_RS18340	0.82	-0.5
3,974,780	+		RR42_RS18340	0.87	+1.0
3,975,062	+				+0.3
3,975,063	-				+1.0
3,975,063	-				-0.3
3,975,063	-				-0.7
3,975,063	-				+0.5
3,975,071	+				+1.0
3,975,071	+				+1.6
3,975,098	+				+2.2
3,975,098	+				-0.1
3,975,099	-				+1.7
3,975,099	-				-1.3
3,975,133	-				-0.5
3,975,141	+				+1.3
3,975,292	-				+1.3
3,975,643	-		RR42_RS18345	0.28	+2.6
3,975,643	-		RR42_RS18345	0.28	+1.2
3,975,763	-		RR42_RS18345	0.34	+2.7
3,975,763	-		RR42_RS18345	0.34	+2.1
3,975,763	-		RR42_RS18345	0.34	+1.1
3,975,763	-		RR42_RS18345	0.34	+1.7
3,975,763	-		RR42_RS18345	0.34	+1.7
3,975,765	+		RR42_RS18345	0.35	+2.6
3,975,765	+		RR42_RS18345	0.35	-0.3
3,975,766	-		RR42_RS18345	0.35	+1.5
3,975,805	-		RR42_RS18345	0.37	+1.1
3,975,808	-		RR42_RS18345	0.37	+1.6
3,975,808	-		RR42_RS18345	0.37	+1.5
3,975,832	+		RR42_RS18345	0.38	+1.1
3,975,832	+		RR42_RS18345	0.38	+0.4
3,975,833	-		RR42_RS18345	0.38	+0.3
3,975,906	+		RR42_RS18345	0.42	+2.4
3,975,906	+		RR42_RS18345	0.42	+1.2
3,975,907	-		RR42_RS18345	0.42	+0.4
3,975,907	-		RR42_RS18345	0.42	+1.0
3,975,954	+		RR42_RS18345	0.45	+1.9
3,975,954	+		RR42_RS18345	0.45	+0.1
3,975,957	+		RR42_RS18345	0.45	+1.3
3,975,957	+		RR42_RS18345	0.45	+1.4
3,975,957	+		RR42_RS18345	0.45	+1.8
3,975,957	+		RR42_RS18345	0.45	+1.5
3,975,958	-		RR42_RS18345	0.45	+0.8
3,975,996	+		RR42_RS18345	0.47	+1.9
3,976,068	+		RR42_RS18345	0.51	+0.7
3,976,068	+		RR42_RS18345	0.51	+0.3
3,976,068	+		RR42_RS18345	0.51	+2.6
3,976,069	-		RR42_RS18345	0.51	+1.8
3,976,069	-		RR42_RS18345	0.51	+1.4
3,976,224	+		RR42_RS18345	0.60	+0.6
3,976,225	-		RR42_RS18345	0.60	+1.3
3,976,225	-		RR42_RS18345	0.60	+1.3
3,976,440	+		RR42_RS18345	0.72	+1.1
3,976,441	-		RR42_RS18345	0.72	+0.1
3,976,441	-		RR42_RS18345	0.72	+0.4
3,976,471	-		RR42_RS18345	0.74	+0.3
3,976,533	+		RR42_RS18345	0.77	-0.6
3,976,533	+		RR42_RS18345	0.77	+1.5
3,976,533	+		RR42_RS18345	0.77	+1.0
3,976,675	-		RR42_RS18345	0.85	+0.1
3,976,675	-		RR42_RS18345	0.85	+1.5
3,976,675	-		RR42_RS18345	0.85	+1.6
3,976,683	+		RR42_RS18345	0.85	+4.4
3,976,683	+		RR42_RS18345	0.85	+1.7
3,976,683	+		RR42_RS18345	0.85	+0.7
3,976,683	+		RR42_RS18345	0.85	+2.6
3,976,684	-		RR42_RS18345	0.85	-0.2
3,976,684	-		RR42_RS18345	0.85	+1.2
3,976,684	-		RR42_RS18345	0.85	+1.3
3,976,684	-		RR42_RS18345	0.85	+1.3
3,976,693	+		RR42_RS18345	0.86	+1.4
3,976,693	+		RR42_RS18345	0.86	+1.0
3,976,790	-				+2.2
3,976,815	+				+1.3
3,976,815	+				+1.4
3,976,815	+				+1.5
3,976,815	+				-0.4
3,976,815	+				+0.6
3,976,816	-				+1.8
3,976,816	-				+0.4
3,976,842	+				+1.6
3,976,842	+				+2.6
3,976,842	+				+1.6
3,976,843	-				+1.5
3,976,843	-				+1.1
3,976,875	-				+0.1
3,976,875	-				+1.5
3,976,929	+				+1.7
3,976,929	+				+1.7
3,976,930	-				+0.5
3,976,957	+				-0.2
3,976,958	-				-0.2
3,977,282	+		RR42_RS18350	0.28	+1.0
3,977,595	+		RR42_RS18350	0.60	+1.2
3,977,596	-		RR42_RS18350	0.60	+0.4
3,977,596	-		RR42_RS18350	0.60	-0.5
3,977,596	-		RR42_RS18350	0.60	-0.7
3,977,597	+		RR42_RS18350	0.60	-1.0
3,977,876	+		RR42_RS18350	0.88	+2.6
3,977,877	-		RR42_RS18350	0.88	+1.3