Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16160

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
3,497,546	-				+0.4
3,497,578	+				+0.3
3,497,578	+				+0.1
3,497,578	+				-1.1
3,497,578	+				+0.4
3,497,578	+				+0.9
3,497,578	+				+0.2
3,497,579	-				-0.2
3,497,611	+				+0.3
3,497,695	-				+0.8
3,497,837	+				+0.3
3,497,837	+				+0.0
3,497,837	+				-1.5
3,497,838	-				-0.1
3,498,007	+		RR42_RS16155	0.27	+0.2
3,498,007	+		RR42_RS16155	0.27	-1.3
3,498,008	-		RR42_RS16155	0.27	+0.1
3,498,008	-		RR42_RS16155	0.27	-0.2
3,498,064	+		RR42_RS16155	0.38	-0.5
3,498,064	+		RR42_RS16155	0.38	+0.4
3,498,064	+		RR42_RS16155	0.38	+1.4
3,498,064	+		RR42_RS16155	0.38	+0.1
3,498,065	-		RR42_RS16155	0.38	+1.0
3,498,160	+		RR42_RS16155	0.58	+0.4
3,498,163	+		RR42_RS16155	0.58	-1.8
3,498,163	+		RR42_RS16155	0.58	-0.2
3,498,163	+		RR42_RS16155	0.58	-2.4
3,498,164	-		RR42_RS16155	0.58	+1.4
3,498,367	+				-0.7
3,498,367	+				+0.8
3,498,367	+				-0.4
3,498,421	+				-0.2
3,498,421	+				-0.8
3,498,422	-				-1.4
3,498,425	+				+3.1
3,498,426	+				+1.6
3,498,426	-				+1.0
3,498,498	+				-0.4
3,498,606	+		RR42_RS16160	0.19	+1.1
3,498,633	+		RR42_RS16160	0.22	-0.1
3,498,800	+		RR42_RS16160	0.43	-1.2
3,498,800	+		RR42_RS16160	0.43	-1.8
3,499,045	+		RR42_RS16160	0.73	-0.1
3,499,046	-		RR42_RS16160	0.73	-0.8
3,499,046	-		RR42_RS16160	0.73	-0.4
3,499,046	-		RR42_RS16160	0.73	-1.3
3,499,096	+		RR42_RS16160	0.79	+1.7
3,499,102	+		RR42_RS16160	0.80	-1.2
3,499,102	+		RR42_RS16160	0.80	+0.6
3,499,103	-		RR42_RS16160	0.80	-0.2
3,499,103	-		RR42_RS16160	0.80	-0.3
3,499,103	-		RR42_RS16160	0.80	-1.3
3,499,103	-		RR42_RS16160	0.80	-0.6
3,499,103	-		RR42_RS16160	0.80	+0.1
3,499,103	-		RR42_RS16160	0.80	-0.6
3,499,234	+				-2.1
3,499,234	+				-0.7
3,499,234	+				-0.5
3,499,235	-				+0.2
3,499,304	+				+0.0
3,499,304	+				+0.6
3,499,304	+				-1.3
3,499,305	-				+1.6
3,499,305	-				-0.1
3,499,308	+				-0.4
3,499,308	+				-0.5
3,499,308	+				-0.8
3,499,309	-				+0.1
3,499,309	-				+0.3
3,499,309	-				-0.3
3,499,420	-				+0.6
3,499,633	-		RR42_RS16165	0.35	+0.0
3,499,633	-		RR42_RS16165	0.35	-0.8
3,499,633	-		RR42_RS16165	0.35	+0.5
3,499,672	+		RR42_RS16165	0.41	-0.1
3,499,673	-		RR42_RS16165	0.41	-0.5
3,499,925	-		RR42_RS16165	0.77	-0.2
3,499,925	-		RR42_RS16165	0.77	-0.4
3,499,925	-		RR42_RS16165	0.77	+0.2
3,499,925	-		RR42_RS16165	0.77	-0.3
3,499,925	-		RR42_RS16165	0.77	-1.7
3,499,984	+		RR42_RS16165	0.85	-0.4
3,499,984	+		RR42_RS16165	0.85	-0.5
3,499,984	+		RR42_RS16165	0.85	-0.7
3,499,985	-		RR42_RS16165	0.85	+0.0
3,499,985	-		RR42_RS16165	0.85	+1.1
3,499,985	-		RR42_RS16165	0.85	+1.6
3,499,985	-		RR42_RS16165	0.85	-1.4
3,499,985	-		RR42_RS16165	0.85	-0.5
3,499,985	-		RR42_RS16165	0.85	+1.0
3,499,985	-		RR42_RS16165	0.85	+0.8
3,499,985	-		RR42_RS16165	0.85	-0.7
3,499,985	-		RR42_RS16165	0.85	+0.4
3,500,087	-				-1.3
3,500,219	+				-0.5
3,500,220	-				+0.3
3,500,220	-				-0.7
3,500,220	-				-0.6
3,500,220	-				-0.2
3,500,220	-				-0.2