Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15805

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15795 and RR42_RS15800 overlap by 4 nucleotidesRR42_RS15800 and RR42_RS15805 overlap by 4 nucleotidesRR42_RS15805 and RR42_RS15810 overlap by 4 nucleotides RR42_RS15795: RR42_RS15795 - spore coat protein, at 3,413,987 to 3,414,757 _RS15795 RR42_RS15800: RR42_RS15800 - aldo/keto reductase, at 3,414,754 to 3,415,650 _RS15800 RR42_RS15805: RR42_RS15805 - spore coat protein, at 3,415,647 to 3,416,795 _RS15805 RR42_RS15810: RR42_RS15810 - UDP-N-acetylglucosamine 4,6-dehydratase, at 3,416,792 to 3,417,793 _RS15810 Position (kb) 3415 3416 3417Strain fitness (log2 ratio) -2 -1 0 1 2at 3414.657 kb on - strand, within RR42_RS15795at 3414.699 kb on - strandat 3414.817 kb on - strandat 3414.884 kb on - strand, within RR42_RS15800at 3414.902 kb on - strand, within RR42_RS15800at 3415.148 kb on - strand, within RR42_RS15800at 3415.506 kb on - strand, within RR42_RS15800at 3415.560 kb on + strand, within RR42_RS15800at 3416.348 kb on - strand, within RR42_RS15805at 3416.866 kb on - strandat 3417.074 kb on + strand, within RR42_RS15810at 3417.335 kb on + strand, within RR42_RS15810at 3417.519 kb on + strand, within RR42_RS15810at 3417.564 kb on + strand, within RR42_RS15810at 3417.565 kb on - strand, within RR42_RS15810

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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3,414,657 - RR42_RS15795 0.87 -0.6
3,414,699 - -0.6
3,414,817 - -1.1
3,414,884 - RR42_RS15800 0.14 -2.1
3,414,902 - RR42_RS15800 0.16 -2.1
3,415,148 - RR42_RS15800 0.44 -1.2
3,415,506 - RR42_RS15800 0.84 -0.4
3,415,560 + RR42_RS15800 0.90 -0.7
3,416,348 - RR42_RS15805 0.61 -0.2
3,416,866 - +2.6
3,417,074 + RR42_RS15810 0.28 -0.2
3,417,335 + RR42_RS15810 0.54 -1.7
3,417,519 + RR42_RS15810 0.73 -0.1
3,417,564 + RR42_RS15810 0.77 +1.0
3,417,565 - RR42_RS15810 0.77 -0.2

Or see this region's nucleotide sequence