Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14075

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
3,028,621	+				+2.4
3,028,693	-		RR42_RS14070	0.16	+2.7
3,028,724	+		RR42_RS14070	0.19	+0.9
3,028,864	-		RR42_RS14070	0.32	+0.7
3,028,889	+		RR42_RS14070	0.35	+2.7
3,028,889	+		RR42_RS14070	0.35	+0.3
3,028,889	+		RR42_RS14070	0.35	+2.1
3,028,890	-		RR42_RS14070	0.35	+1.9
3,028,890	-		RR42_RS14070	0.35	+3.5
3,028,890	-		RR42_RS14070	0.35	+1.9
3,029,143	-		RR42_RS14070	0.58	+1.3
3,029,147	+		RR42_RS14070	0.59	+2.8
3,029,147	+		RR42_RS14070	0.59	+1.8
3,029,147	+		RR42_RS14070	0.59	+2.3
3,029,147	+		RR42_RS14070	0.59	+2.3
3,029,147	+		RR42_RS14070	0.59	+2.1
3,029,147	+		RR42_RS14070	0.59	+1.5
3,029,147	+		RR42_RS14070	0.59	+1.6
3,029,148	-		RR42_RS14070	0.59	+1.8
3,029,148	-		RR42_RS14070	0.59	+3.0
3,029,148	-		RR42_RS14070	0.59	+2.2
3,029,148	-		RR42_RS14070	0.59	+2.4
3,029,148	-		RR42_RS14070	0.59	+1.7
3,029,148	-		RR42_RS14070	0.59	+1.5
3,029,315	+		RR42_RS14070	0.74	+2.3
3,029,315	+		RR42_RS14070	0.74	+2.2
3,029,316	-		RR42_RS14070	0.74	+2.1
3,029,339	+		RR42_RS14070	0.77	+2.9
3,029,339	+		RR42_RS14070	0.77	+2.0
3,029,340	-		RR42_RS14070	0.77	+2.0
3,029,350	-		RR42_RS14070	0.78	+0.6
3,029,382	-				-0.1
3,029,382	-		RR42_RS14070	0.81	+1.3
3,029,399	+		RR42_RS14070	0.82	+2.7
3,029,400	-		RR42_RS14070	0.82	+1.7
3,029,466	+		RR42_RS14070	0.88	+3.7
3,029,466	+		RR42_RS14070	0.88	+2.4
3,029,466	+		RR42_RS14070	0.88	+2.2
3,029,466	+		RR42_RS14070	0.88	+1.9
3,029,583	+				+2.8
3,029,583	+				+2.4
3,029,599	+				-0.5
3,029,600	-				+2.1
3,029,600	-				+0.9
3,029,701	+		RR42_RS14075	0.16	+1.2
3,029,701	+		RR42_RS14075	0.16	+0.6
3,029,701	+		RR42_RS14075	0.16	+1.7
3,030,079	+		RR42_RS14075	0.76	+1.9
3,030,079	+		RR42_RS14075	0.76	+2.5
3,030,079	+		RR42_RS14075	0.76	+3.9
3,030,079	+		RR42_RS14075	0.76	+2.9
3,030,079	+		RR42_RS14075	0.76	+2.6
3,030,079	+		RR42_RS14075	0.76	+2.4
3,030,080	-		RR42_RS14075	0.77	+1.9
3,030,080	-		RR42_RS14075	0.77	+2.5
3,030,080	-		RR42_RS14075	0.77	-0.3
3,030,135	+		RR42_RS14075	0.85	+1.8
3,030,135	+		RR42_RS14075	0.85	+2.0
3,030,135	+		RR42_RS14075	0.85	+2.9
3,030,136	-		RR42_RS14075	0.85	+2.2
3,030,212	+				+2.0
3,030,212	+				+2.5
3,030,212	+				+2.5
3,030,212	+				+2.3
3,030,213	-				+3.8
3,030,271	+				+3.3
3,030,329	+				+2.7
3,030,330	-				-2.1
3,030,334	-				-0.7
3,030,340	+				+0.9
3,030,346	+				+1.9
3,030,347	-				-0.1
3,030,351	-				-0.7
3,030,351	-				+1.1
3,030,351	-				-1.6
3,030,356	+				+2.6
3,030,357	-				+0.0
3,030,363	+				+1.9
3,030,490	-		RR42_RS14080	0.21	-1.8
3,030,587	-		RR42_RS14080	0.38	-2.2
3,030,607	+		RR42_RS14080	0.41	+0.5
3,030,608	-		RR42_RS14080	0.41	-0.7
3,030,613	+		RR42_RS14080	0.42	-1.0
3,030,614	-		RR42_RS14080	0.42	-0.3
3,030,614	-		RR42_RS14080	0.42	-1.3
3,030,621	-		RR42_RS14080	0.43	-3.4
3,030,621	-		RR42_RS14080	0.43	-3.3
3,030,705	+		RR42_RS14080	0.57	-2.4
3,030,705	+		RR42_RS14080	0.57	-1.9
3,030,705	+		RR42_RS14080	0.57	-0.1
3,030,705	+		RR42_RS14080	0.57	-3.0
3,030,706	-		RR42_RS14080	0.57	-1.6
3,030,706	-		RR42_RS14080	0.57	-3.0
3,030,747	+		RR42_RS14080	0.64	-2.3
3,030,786	+		RR42_RS14080	0.71	+1.1
3,030,787	-		RR42_RS14080	0.71	-0.7
3,030,787	-		RR42_RS14080	0.71	-3.2
3,030,876	+		RR42_RS14080	0.86	-1.1
3,030,877	-		RR42_RS14080	0.86	-4.8
3,030,877	-		RR42_RS14080	0.86	-1.2
3,030,966	-				-0.7
3,030,966	-				-2.2
3,030,981	+				-1.0
3,030,982	-				-2.4
3,030,982	-				+0.5
3,030,982	-				-0.3
3,031,014	+				+0.4
3,031,024	-				+0.1
3,031,024	-				-0.4
3,031,024	-				+0.5
3,031,024	-				-0.1
3,031,060	+				-1.3
3,031,061	-				-0.5
3,031,061	-				+0.5
3,031,061	-				+0.4
3,031,081	+				-2.3
3,031,082	-				+0.1
3,031,138	+		RR42_RS14085	0.10	-2.3
3,031,139	-		RR42_RS14085	0.11	-0.9