Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13560

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,927,336	+		RR42_RS13555	0.76	+0.1
2,927,385	+		RR42_RS13555	0.78	-1.1
2,927,494	-		RR42_RS13555	0.82	-1.2
2,927,525	+		RR42_RS13555	0.84	-1.1
2,927,525	+		RR42_RS13555	0.84	+0.5
2,927,804	+				-0.1
2,927,804	+				+0.4
2,927,829	-				-0.3
2,927,874	-				+2.5
2,928,425	+		RR42_RS13560	0.17	+0.2
2,928,532	+		RR42_RS13560	0.22	+0.1
2,928,534	+		RR42_RS13560	0.23	+0.0
2,928,534	+		RR42_RS13560	0.23	-0.3
2,928,534	+		RR42_RS13560	0.23	+0.9
2,928,535	-		RR42_RS13560	0.23	+2.5
2,928,573	+		RR42_RS13560	0.25	+0.2
2,928,603	+		RR42_RS13560	0.26	+1.5
2,928,603	+		RR42_RS13560	0.26	+0.7
2,928,604	-		RR42_RS13560	0.26	+0.2
2,928,604	-		RR42_RS13560	0.26	-0.8
2,928,635	+		RR42_RS13560	0.28	-0.3
2,928,635	+		RR42_RS13560	0.28	+0.0
2,928,747	+		RR42_RS13560	0.34	+0.1
2,928,840	+		RR42_RS13560	0.39	-0.3
2,928,840	+		RR42_RS13560	0.39	+0.5
2,928,840	+		RR42_RS13560	0.39	+0.4
2,928,841	-		RR42_RS13560	0.39	-1.9
2,928,841	-		RR42_RS13560	0.39	-0.1
2,929,023	+		RR42_RS13560	0.48	-0.0
2,929,023	+		RR42_RS13560	0.48	-0.4
2,929,080	+		RR42_RS13560	0.51	+0.1
2,929,080	+		RR42_RS13560	0.51	-0.8
2,929,080	+		RR42_RS13560	0.51	+1.2
2,929,117	-		RR42_RS13560	0.53	+1.0
2,929,123	+		RR42_RS13560	0.54	+0.9
2,929,123	+		RR42_RS13560	0.54	+2.2
2,929,123	+		RR42_RS13560	0.54	-0.1
2,929,123	+		RR42_RS13560	0.54	+0.7
2,929,125	+		RR42_RS13560	0.54	+0.1
2,929,125	+		RR42_RS13560	0.54	+0.6
2,929,125	+		RR42_RS13560	0.54	-1.0
2,929,125	+		RR42_RS13560	0.54	+0.0
2,929,125	+		RR42_RS13560	0.54	-0.3
2,929,126	-		RR42_RS13560	0.54	-0.4
2,929,126	-		RR42_RS13560	0.54	+0.1
2,929,126	-		RR42_RS13560	0.54	+0.6
2,929,126	-		RR42_RS13560	0.54	+0.1
2,929,126	-		RR42_RS13560	0.54	-1.8
2,929,126	-		RR42_RS13560	0.54	-0.1
2,929,126	-		RR42_RS13560	0.54	-0.1
2,929,126	-		RR42_RS13560	0.54	-0.8
2,929,126	-		RR42_RS13560	0.54	-0.2
2,929,126	-		RR42_RS13560	0.54	+0.5
2,929,126	-		RR42_RS13560	0.54	+0.1
2,929,197	+		RR42_RS13560	0.58	-0.2
2,929,197	+		RR42_RS13560	0.58	+0.3
2,929,279	+		RR42_RS13560	0.62	-0.2
2,929,280	-		RR42_RS13560	0.62	-1.2
2,929,282	-		RR42_RS13560	0.62	-1.3
2,929,282	-		RR42_RS13560	0.62	+0.0
2,929,290	+		RR42_RS13560	0.62	-0.5
2,929,290	+		RR42_RS13560	0.62	+1.7
2,929,291	-		RR42_RS13560	0.63	+2.5
2,929,362	+		RR42_RS13560	0.66	-1.2
2,929,363	-		RR42_RS13560	0.66	+0.5
2,929,656	+		RR42_RS13560	0.82	+0.0
2,929,656	+		RR42_RS13560	0.82	+0.0
2,929,657	-		RR42_RS13560	0.82	+3.1
2,929,657	-		RR42_RS13560	0.82	+0.7
2,929,679	+		RR42_RS13560	0.83	-0.4
2,929,679	+		RR42_RS13560	0.83	+0.7
2,929,741	-		RR42_RS13560	0.86	-1.8
2,929,746	+		RR42_RS13560	0.87	+0.1
2,929,746	+		RR42_RS13560	0.87	-3.1
2,929,746	+		RR42_RS13560	0.87	+0.1
2,929,747	-		RR42_RS13560	0.87	+0.5
2,929,779	+		RR42_RS13560	0.88	+0.0
2,929,779	+		RR42_RS13560	0.88	-0.4
2,929,779	+		RR42_RS13560	0.88	-0.3
2,929,779	+		RR42_RS13560	0.88	-1.2
2,929,779	+		RR42_RS13560	0.88	+0.1
2,929,779	+		RR42_RS13560	0.88	-1.3
2,929,779	+		RR42_RS13560	0.88	+0.8
2,929,779	+		RR42_RS13560	0.88	-0.1
2,929,780	-		RR42_RS13560	0.88	-1.3
2,929,780	-		RR42_RS13560	0.88	+0.4
2,929,780	-		RR42_RS13560	0.88	+0.5
2,929,780	-		RR42_RS13560	0.88	-0.2
2,930,195	+				-1.6
2,930,196	-				+0.6
2,930,206	+				-0.8
2,930,661	+		RR42_RS13565	0.22	+2.5
2,930,661	+		RR42_RS13565	0.22	-1.9
2,930,686	+		RR42_RS13565	0.24	+0.3
2,930,686	+		RR42_RS13565	0.24	+0.1
2,930,687	-		RR42_RS13565	0.24	-2.0
2,930,884	+		RR42_RS13565	0.36	-1.5
2,930,964	+		RR42_RS13565	0.40	-1.5
2,930,964	+		RR42_RS13565	0.40	-1.4
2,930,965	-		RR42_RS13565	0.40	-0.3
2,930,965	-		RR42_RS13565	0.40	-1.5
2,930,979	+		RR42_RS13565	0.41	-0.9
2,930,979	+		RR42_RS13565	0.41	-2.4
2,930,980	-		RR42_RS13565	0.41	-0.5
2,930,980	-		RR42_RS13565	0.41	-0.5