Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11125

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,374,879	-		RR42_RS11115	0.89	-0.1
2,374,879	-		RR42_RS11115	0.89	+0.2
2,374,983	+				-1.4
2,374,984	-				+0.2
2,374,987	+				+0.2
2,374,987	+				-2.4
2,374,988	-				+1.1
2,374,988	-				+0.0
2,374,988	-				-1.0
2,374,988	-				+0.1
2,374,988	-				-0.1
2,374,989	+				+0.7
2,374,989	+				+2.2
2,374,990	-				+0.7
2,375,293	-		RR42_RS11120	0.50	-0.4
2,375,364	+		RR42_RS11120	0.61	+0.7
2,375,365	-		RR42_RS11120	0.61	+0.3
2,375,386	-		RR42_RS11120	0.64	-0.6
2,375,603	-				-0.3
2,375,603	-				-0.2
2,375,704	+				+0.5
2,375,705	-				-0.7
2,375,705	-				-1.1
2,375,705	-				+2.5
2,375,843	-				-0.5
2,375,843	-				-2.2
2,375,989	+		RR42_RS11125	0.10	+0.3
2,375,990	-		RR42_RS11125	0.11	-0.9
2,375,990	-		RR42_RS11125	0.11	-0.2
2,375,992	-		RR42_RS11125	0.11	-0.4
2,375,992	-		RR42_RS11125	0.11	+0.3
2,376,250	+		RR42_RS11125	0.29	+0.4
2,376,250	+		RR42_RS11125	0.29	+0.5
2,376,251	-		RR42_RS11125	0.30	+1.1
2,376,251	-		RR42_RS11125	0.30	-0.5
2,376,253	+		RR42_RS11125	0.30	+0.5
2,376,361	+		RR42_RS11125	0.38	-0.4
2,376,362	-		RR42_RS11125	0.38	+0.3
2,376,362	-		RR42_RS11125	0.38	-1.2
2,376,931	+		RR42_RS11125	0.79	-0.7
2,376,932	-		RR42_RS11125	0.79	-0.6
2,377,216	+				-1.0
2,377,217	-				+0.2
2,377,294	+				-1.0
2,377,295	-				-0.0
2,377,472	-		RR42_RS11130	0.25	-1.1
2,377,611	-		RR42_RS11130	0.45	-1.5
2,377,645	+		RR42_RS11130	0.49	-1.5
2,377,646	-		RR42_RS11130	0.49	-0.7
2,377,646	-		RR42_RS11130	0.49	-0.8
2,377,646	-		RR42_RS11130	0.49	+0.3
2,377,646	-		RR42_RS11130	0.49	-0.2
2,377,646	-		RR42_RS11130	0.49	-0.3
2,377,646	-		RR42_RS11130	0.49	-1.4
2,377,646	-		RR42_RS11130	0.49	+0.2
2,377,740	-		RR42_RS11130	0.63	-0.7
2,377,740	-		RR42_RS11130	0.63	+1.5
2,377,759	+		RR42_RS11130	0.65	-1.7
2,377,925	+		RR42_RS11130	0.89	+0.5
2,377,950	-				-0.1
2,377,967	-				-0.3
2,378,052	+				-0.3