Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09425

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
1,998,553	+				-0.3
1,998,553	+				+0.4
1,998,553	+				-0.1
1,998,554	-				+0.2
1,998,554	-				-3.0
1,998,554	-				+0.8
1,998,554	-				+1.3
1,998,554	-				+0.7
1,998,564	+				+0.8
1,998,564	+				-0.5
1,998,565	-				+0.5
1,998,565	-				+0.5
1,999,140	+		RR42_RS09420	0.51	+1.7
1,999,140	+		RR42_RS09420	0.51	+1.9
1,999,140	+		RR42_RS09420	0.51	-3.5
1,999,141	-		RR42_RS09420	0.51	+1.1
1,999,279	+		RR42_RS09420	0.71	-0.9
1,999,280	-		RR42_RS09420	0.71	+0.9
1,999,482	+				+1.8
1,999,583	+				+0.8
1,999,583	+				-0.0
1,999,627	+				-0.3
1,999,848	+		RR42_RS09425	0.23	-1.0
1,999,848	+		RR42_RS09425	0.23	-1.9
1,999,849	-		RR42_RS09425	0.23	+0.2
1,999,849	-		RR42_RS09425	0.23	-0.5
1,999,935	+		RR42_RS09425	0.29	+0.2
1,999,936	-		RR42_RS09425	0.30	-1.6
1,999,936	-		RR42_RS09425	0.30	+0.5
2,000,046	+		RR42_RS09425	0.37	+0.5
2,000,046	+		RR42_RS09425	0.37	-0.4
2,000,047	-		RR42_RS09425	0.38	-0.9
2,000,047	-		RR42_RS09425	0.38	-2.0
2,000,112	+		RR42_RS09425	0.42	-0.2
2,000,112	+		RR42_RS09425	0.42	-0.3
2,000,112	+		RR42_RS09425	0.42	-0.6
2,000,112	+		RR42_RS09425	0.42	+0.0
2,000,112	+		RR42_RS09425	0.42	-0.5
2,000,113	-		RR42_RS09425	0.42	+0.3
2,000,323	+		RR42_RS09425	0.57	+0.8
2,000,324	-		RR42_RS09425	0.57	-0.2
2,000,533	+		RR42_RS09425	0.72	+0.5
2,000,534	-		RR42_RS09425	0.73	-0.1
2,000,779	-				-1.0
2,000,870	-				+1.6
2,000,917	-				-1.5
2,000,971	-				-0.3
2,000,971	-				-0.1
2,000,971	-				-0.9
2,000,971	-				+0.3
2,000,971	-				+0.3
2,001,132	+				+0.2
2,001,133	-				+0.3
2,001,309	+		RR42_RS09430	0.19	+2.2
2,001,313	+		RR42_RS09430	0.20	+0.7
2,001,313	+		RR42_RS09430	0.20	+0.8
2,001,313	+		RR42_RS09430	0.20	-2.2
2,001,314	-		RR42_RS09430	0.20	-0.4
2,001,314	-		RR42_RS09430	0.20	-0.9
2,001,384	+		RR42_RS09430	0.24	-0.1
2,001,453	+		RR42_RS09430	0.29	+0.3
2,001,486	+		RR42_RS09430	0.31	-1.2
2,001,487	-		RR42_RS09430	0.31	-0.2
2,001,618	+		RR42_RS09430	0.40	-2.1
2,001,619	-		RR42_RS09430	0.40	+1.5
2,001,640	-		RR42_RS09430	0.41	+0.3
2,001,640	-		RR42_RS09430	0.41	+0.2
2,001,787	-		RR42_RS09430	0.51	-1.9
2,001,787	-		RR42_RS09430	0.51	-1.1
2,001,787	-		RR42_RS09430	0.51	-1.2
2,001,804	+		RR42_RS09430	0.52	+0.8
2,001,804	+		RR42_RS09430	0.52	-1.3
2,001,805	-		RR42_RS09430	0.52	+0.2
2,001,805	-		RR42_RS09430	0.52	-1.1
2,001,805	-		RR42_RS09430	0.52	+0.5
2,001,909	+		RR42_RS09430	0.59	-0.4