Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09335

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
1,973,432	+		RR42_RS09330	0.57	-3.6
1,973,433	-		RR42_RS09330	0.57	+0.1
1,973,433	-		RR42_RS09330	0.57	+0.5
1,973,510	+		RR42_RS09330	0.67	+1.5
1,973,510	+		RR42_RS09330	0.67	-0.4
1,973,511	-		RR42_RS09330	0.67	+0.6
1,973,511	-		RR42_RS09330	0.67	-0.6
1,973,511	-		RR42_RS09330	0.67	-0.9
1,973,511	-		RR42_RS09330	0.67	+0.5
1,973,511	-		RR42_RS09330	0.67	+0.2
1,973,717	+				-0.1
1,973,717	+				-0.5
1,973,801	-				-0.5
1,973,801	-				+0.7
1,973,801	-				-0.1
1,973,835	-				-1.5
1,974,073	-				-2.1
1,974,359	+		RR42_RS09335	0.10	-1.1
1,974,359	+		RR42_RS09335	0.10	-0.2
1,974,425	+		RR42_RS09335	0.13	-0.5
1,974,426	-		RR42_RS09335	0.13	-0.1
1,974,563	+		RR42_RS09335	0.19	-1.2
1,974,662	+		RR42_RS09335	0.23	+0.5
1,974,662	+		RR42_RS09335	0.23	+0.2
1,974,663	-		RR42_RS09335	0.23	-0.1
1,974,663	-		RR42_RS09335	0.23	-0.7
1,974,663	-		RR42_RS09335	0.23	-2.0
1,974,663	-		RR42_RS09335	0.23	-0.2
1,974,664	+		RR42_RS09335	0.23	-0.6
1,974,665	-		RR42_RS09335	0.23	+0.3
1,974,665	-		RR42_RS09335	0.23	-1.2
1,974,665	-		RR42_RS09335	0.23	+0.5
1,974,717	-		RR42_RS09335	0.26	+0.4
1,974,846	-		RR42_RS09335	0.31	+0.2
1,974,958	+		RR42_RS09335	0.36	-2.2
1,975,029	+		RR42_RS09335	0.39	-1.3
1,975,029	+		RR42_RS09335	0.39	+0.3
1,975,030	-		RR42_RS09335	0.39	-0.7
1,975,118	+		RR42_RS09335	0.42	+1.5
1,975,256	+		RR42_RS09335	0.48	-1.5
1,975,256	+		RR42_RS09335	0.48	-1.2
1,975,257	-		RR42_RS09335	0.48	+0.1
1,975,257	-		RR42_RS09335	0.48	+0.9
1,975,257	-		RR42_RS09335	0.48	+0.7
1,975,283	+		RR42_RS09335	0.49	-0.3
1,975,398	-		RR42_RS09335	0.54	+0.6
1,975,626	-		RR42_RS09335	0.64	+0.1
1,975,754	+		RR42_RS09335	0.69	-0.3
1,975,754	+		RR42_RS09335	0.69	-1.9
1,976,025	-		RR42_RS09335	0.81	+0.3
1,976,025	-		RR42_RS09335	0.81	-0.9
1,976,025	-		RR42_RS09335	0.81	-0.0
1,976,127	-		RR42_RS09335	0.85	-0.8
1,976,138	+		RR42_RS09335	0.85	-0.1
1,976,138	+		RR42_RS09335	0.85	+0.5
1,976,139	-		RR42_RS09335	0.85	-0.1
1,976,217	-		RR42_RS09335	0.89	+0.4
1,976,321	+				+0.3
1,976,322	-				+0.8
1,976,322	-				-0.9
1,976,602	+				-0.2
1,976,603	-				-1.1
1,976,603	-				+0.5
1,976,777	+		RR42_RS09340	0.30	-0.3
1,976,783	+		RR42_RS09340	0.31	-0.7
1,976,783	+		RR42_RS09340	0.31	-1.4
1,976,784	-		RR42_RS09340	0.31	-0.1
1,976,804	+		RR42_RS09340	0.34	+1.1
1,976,827	+		RR42_RS09340	0.38	-1.1
1,976,828	-		RR42_RS09340	0.38	-1.1
1,976,828	-		RR42_RS09340	0.38	-0.7
1,976,828	-		RR42_RS09340	0.38	-0.6
1,976,859	-		RR42_RS09340	0.43	-0.7
1,976,865	-		RR42_RS09340	0.44	-0.9
1,976,963	-		RR42_RS09340	0.60	+0.5
1,976,963	-		RR42_RS09340	0.60	-1.1
1,976,963	-		RR42_RS09340	0.60	-0.1
1,976,972	-		RR42_RS09340	0.61	+1.3
1,977,008	-		RR42_RS09340	0.67	-0.9
1,977,059	-		RR42_RS09340	0.75	-0.2
1,977,239	-				+1.5
1,977,242	+				+0.6
1,977,242	+				-0.9
1,977,242	+				-0.4
1,977,242	+				-1.5
1,977,293	+				-0.2
1,977,294	-				+0.2
1,977,329	+				+0.2
1,977,344	+				-0.5
1,977,345	-				+2.1
1,977,387	-				-0.3
1,977,418	+		RR42_RS09345	0.13	-1.2
1,977,418	+		RR42_RS09345	0.13	+2.5
1,977,419	-		RR42_RS09345	0.13	+0.5
1,977,419	-		RR42_RS09345	0.13	-0.5
1,977,419	-		RR42_RS09345	0.13	-0.2
1,977,419	-		RR42_RS09345	0.13	-0.1
1,977,419	-		RR42_RS09345	0.13	+0.5