Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06580

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06575 and RR42_RS06580 are separated by 62 nucleotidesRR42_RS06580 and RR42_RS06585 are separated by 15 nucleotides RR42_RS06575: RR42_RS06575 - alpha/beta hydrolase, at 1,436,778 to 1,437,665 _RS06575 RR42_RS06580: RR42_RS06580 - aminoacrylate peracid reductase, at 1,437,728 to 1,438,090 _RS06580 RR42_RS06585: RR42_RS06585 - GTP pyrophosphokinase, at 1,438,106 to 1,440,328 _RS06585 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1436.760 kb on + strandat 1436.760 kb on + strandat 1436.848 kb on - strandat 1436.848 kb on - strandat 1436.956 kb on - strand, within RR42_RS06575at 1436.956 kb on - strand, within RR42_RS06575at 1436.978 kb on - strand, within RR42_RS06575at 1436.978 kb on - strand, within RR42_RS06575at 1437.022 kb on - strand, within RR42_RS06575at 1437.036 kb on + strandat 1437.037 kb on - strand, within RR42_RS06575at 1437.037 kb on - strand, within RR42_RS06575at 1437.037 kb on - strand, within RR42_RS06575at 1437.037 kb on - strand, within RR42_RS06575at 1437.037 kb on - strand, within RR42_RS06575at 1437.222 kb on + strand, within RR42_RS06575at 1437.222 kb on + strand, within RR42_RS06575at 1437.223 kb on - strand, within RR42_RS06575at 1437.223 kb on - strand, within RR42_RS06575at 1437.388 kb on - strand, within RR42_RS06575at 1437.499 kb on + strand, within RR42_RS06575at 1437.639 kb on - strandat 1437.717 kb on - strandat 1437.780 kb on - strand, within RR42_RS06580at 1437.803 kb on + strand, within RR42_RS06580at 1437.803 kb on + strand, within RR42_RS06580at 1437.804 kb on - strand, within RR42_RS06580at 1437.804 kb on - strand, within RR42_RS06580at 1438.006 kb on + strand, within RR42_RS06580at 1438.053 kb on - strand, within RR42_RS06580at 1438.411 kb on + strand, within RR42_RS06585at 1438.411 kb on + strand, within RR42_RS06585at 1438.637 kb on + strand, within RR42_RS06585at 1438.637 kb on + strand, within RR42_RS06585at 1438.721 kb on - strand, within RR42_RS06585at 1438.724 kb on + strand, within RR42_RS06585at 1438.724 kb on + strand, within RR42_RS06585at 1438.724 kb on + strand, within RR42_RS06585at 1438.724 kb on + strand, within RR42_RS06585at 1438.725 kb on - strand, within RR42_RS06585at 1438.725 kb on - strand, within RR42_RS06585at 1438.725 kb on - strand, within RR42_RS06585at 1438.775 kb on + strand, within RR42_RS06585at 1438.775 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.858 kb on + strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.859 kb on - strand, within RR42_RS06585at 1438.863 kb on - strand, within RR42_RS06585at 1438.863 kb on - strand, within RR42_RS06585at 1438.863 kb on - strand, within RR42_RS06585at 1438.863 kb on - strand, within RR42_RS06585at 1438.913 kb on + strand, within RR42_RS06585at 1438.913 kb on + strand, within RR42_RS06585at 1438.914 kb on - strand, within RR42_RS06585at 1438.962 kb on - strand, within RR42_RS06585at 1438.987 kb on + strand, within RR42_RS06585at 1438.988 kb on - strand, within RR42_RS06585at 1438.988 kb on - strand, within RR42_RS06585at 1438.988 kb on - strand, within RR42_RS06585at 1438.988 kb on - strand, within RR42_RS06585at 1439.021 kb on + strand, within RR42_RS06585at 1439.021 kb on + strand, within RR42_RS06585at 1439.022 kb on - strand, within RR42_RS06585at 1439.022 kb on - strand, within RR42_RS06585

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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1,436,760 + -2.1
1,436,760 + -0.8
1,436,848 - -0.1
1,436,848 - -0.3
1,436,956 - RR42_RS06575 0.20 +0.5
1,436,956 - RR42_RS06575 0.20 -0.8
1,436,978 - RR42_RS06575 0.23 -0.2
1,436,978 - RR42_RS06575 0.23 +0.9
1,437,022 - RR42_RS06575 0.27 +0.4
1,437,036 + +0.5
1,437,037 - RR42_RS06575 0.29 -0.9
1,437,037 - RR42_RS06575 0.29 -0.1
1,437,037 - RR42_RS06575 0.29 +0.5
1,437,037 - RR42_RS06575 0.29 -0.2
1,437,037 - RR42_RS06575 0.29 -0.4
1,437,222 + RR42_RS06575 0.50 -0.6
1,437,222 + RR42_RS06575 0.50 +0.5
1,437,223 - RR42_RS06575 0.50 +0.9
1,437,223 - RR42_RS06575 0.50 -1.1
1,437,388 - RR42_RS06575 0.69 +1.7
1,437,499 + RR42_RS06575 0.81 +2.5
1,437,639 - +0.4
1,437,717 - +0.4
1,437,780 - RR42_RS06580 0.14 +2.5
1,437,803 + RR42_RS06580 0.21 -0.3
1,437,803 + RR42_RS06580 0.21 +0.1
1,437,804 - RR42_RS06580 0.21 +0.1
1,437,804 - RR42_RS06580 0.21 -1.7
1,438,006 + RR42_RS06580 0.77 +1.3
1,438,053 - RR42_RS06580 0.90 +0.6
1,438,411 + RR42_RS06585 0.14 -0.1
1,438,411 + RR42_RS06585 0.14 -1.4
1,438,637 + RR42_RS06585 0.24 +0.2
1,438,637 + RR42_RS06585 0.24 -0.4
1,438,721 - RR42_RS06585 0.28 +0.7
1,438,724 + RR42_RS06585 0.28 +0.5
1,438,724 + RR42_RS06585 0.28 +0.2
1,438,724 + RR42_RS06585 0.28 +0.8
1,438,724 + RR42_RS06585 0.28 +2.5
1,438,725 - RR42_RS06585 0.28 -1.2
1,438,725 - RR42_RS06585 0.28 -0.2
1,438,725 - RR42_RS06585 0.28 +1.6
1,438,775 + RR42_RS06585 0.30 +0.7
1,438,775 + RR42_RS06585 0.30 +0.8
1,438,858 + RR42_RS06585 0.34 +1.7
1,438,858 + RR42_RS06585 0.34 -0.6
1,438,858 + RR42_RS06585 0.34 +0.2
1,438,858 + RR42_RS06585 0.34 +2.5
1,438,858 + RR42_RS06585 0.34 -0.7
1,438,858 + RR42_RS06585 0.34 -0.8
1,438,858 + RR42_RS06585 0.34 +0.6
1,438,858 + RR42_RS06585 0.34 +0.9
1,438,858 + RR42_RS06585 0.34 -0.1
1,438,859 - RR42_RS06585 0.34 -1.0
1,438,859 - RR42_RS06585 0.34 +1.1
1,438,859 - RR42_RS06585 0.34 +1.7
1,438,859 - RR42_RS06585 0.34 -0.4
1,438,859 - RR42_RS06585 0.34 -0.2
1,438,859 - RR42_RS06585 0.34 +0.4
1,438,859 - RR42_RS06585 0.34 -0.6
1,438,859 - RR42_RS06585 0.34 +4.5
1,438,859 - RR42_RS06585 0.34 +0.4
1,438,863 - RR42_RS06585 0.34 -1.1
1,438,863 - RR42_RS06585 0.34 -0.5
1,438,863 - RR42_RS06585 0.34 +0.0
1,438,863 - RR42_RS06585 0.34 +0.1
1,438,913 + RR42_RS06585 0.36 -1.1
1,438,913 + RR42_RS06585 0.36 +1.3
1,438,914 - RR42_RS06585 0.36 -1.3
1,438,962 - RR42_RS06585 0.39 +0.5
1,438,987 + RR42_RS06585 0.40 +0.5
1,438,988 - RR42_RS06585 0.40 -2.0
1,438,988 - RR42_RS06585 0.40 +0.2
1,438,988 - RR42_RS06585 0.40 +0.6
1,438,988 - RR42_RS06585 0.40 +0.4
1,439,021 + RR42_RS06585 0.41 +0.8
1,439,021 + RR42_RS06585 0.41 -0.8
1,439,022 - RR42_RS06585 0.41 +0.2
1,439,022 - RR42_RS06585 0.41 -0.3

Or see this region's nucleotide sequence