Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06280

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
1,375,734	+				+1.3
1,375,824	-				+0.7
1,375,824	-				+0.1
1,375,824	-				-1.2
1,375,825	+				-0.6
1,375,826	-				-0.6
1,375,890	+				-0.8
1,375,890	+				-2.3
1,375,890	+				+0.5
1,375,890	+				+2.0
1,375,891	-				-1.6
1,375,891	-				+0.6
1,375,948	-		RR42_RS06275	0.18	+0.1
1,375,948	-		RR42_RS06275	0.18	-0.8
1,375,948	-		RR42_RS06275	0.18	-1.2
1,376,061	+		RR42_RS06275	0.39	+0.2
1,376,062	-		RR42_RS06275	0.39	-2.6
1,376,083	+		RR42_RS06275	0.43	-1.0
1,376,083	+		RR42_RS06275	0.43	-0.6
1,376,175	+		RR42_RS06275	0.60	-0.5
1,376,176	-		RR42_RS06275	0.60	-0.5
1,376,176	-		RR42_RS06275	0.60	+0.1
1,376,176	-		RR42_RS06275	0.60	-2.3
1,376,176	-		RR42_RS06275	0.60	+0.1
1,376,428	+				-2.1
1,376,485	-				-1.6
1,376,485	-				+0.2
1,376,559	+				-0.3
1,376,946	+		RR42_RS06280	0.44	+0.4
1,376,947	-		RR42_RS06280	0.44	+1.3
1,377,022	-		RR42_RS06280	0.51	+0.5
1,377,034	+		RR42_RS06280	0.52	-0.1
1,377,034	+		RR42_RS06280	0.52	+0.5
1,377,035	-		RR42_RS06280	0.52	-0.5
1,377,035	-		RR42_RS06280	0.52	-0.7
1,377,193	-		RR42_RS06280	0.67	+0.1
1,377,193	-		RR42_RS06280	0.67	+0.7
1,377,221	+		RR42_RS06280	0.70	-1.2
1,377,551	-				+0.2
1,377,643	+				+0.5
1,377,643	+				+0.8
1,377,643	+				-1.8
1,377,643	+				-0.1
1,377,643	+				+0.5
1,377,644	-				-0.1
1,377,644	-				-0.5
1,377,644	-				-2.5
1,377,644	-				-0.2
1,377,887	+		RR42_RS06285	0.13	-1.2
1,377,887	+				+1.5
1,377,888	-		RR42_RS06285	0.13	+0.5
1,378,013	+		RR42_RS06285	0.18	-1.5
1,378,013	+		RR42_RS06285	0.18	+0.4
1,378,014	-		RR42_RS06285	0.18	-0.5
1,378,032	+		RR42_RS06285	0.19	-1.3
1,378,032	+		RR42_RS06285	0.19	-0.3
1,378,033	-		RR42_RS06285	0.19	-0.3
1,378,279	+		RR42_RS06285	0.28	-1.1
1,378,280	-		RR42_RS06285	0.28	-1.0
1,378,283	+		RR42_RS06285	0.28	-0.2
1,378,283	+		RR42_RS06285	0.28	-1.7
1,378,283	+		RR42_RS06285	0.28	+0.2
1,378,283	+		RR42_RS06285	0.28	-0.8
1,378,283	+		RR42_RS06285	0.28	+1.3
1,378,283	+		RR42_RS06285	0.28	-0.5
1,378,284	-		RR42_RS06285	0.28	+0.0
1,378,284	-		RR42_RS06285	0.28	+0.9
1,378,341	+		RR42_RS06285	0.30	-0.2