Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05915

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05910 and RR42_RS05915 are separated by 72 nucleotidesRR42_RS05915 and RR42_RS05920 are separated by 114 nucleotides RR42_RS05910: RR42_RS05910 - DNA repair protein, at 1,302,138 to 1,303,862 _RS05910 RR42_RS05915: RR42_RS05915 - inorganic polyphosphate kinase, at 1,303,935 to 1,304,852 _RS05915 RR42_RS05920: RR42_RS05920 - HrcA family transcriptional regulator, at 1,304,967 to 1,306,004 _RS05920 Position (kb) 1303 1304 1305Strain fitness (log2 ratio) -2 -1 0 1 2at 1303.010 kb on - strand, within RR42_RS05910at 1303.071 kb on + strand, within RR42_RS05910at 1303.072 kb on - strand, within RR42_RS05910at 1303.225 kb on + strand, within RR42_RS05910at 1303.225 kb on + strand, within RR42_RS05910at 1303.225 kb on + strand, within RR42_RS05910at 1303.226 kb on - strand, within RR42_RS05910at 1303.461 kb on + strand, within RR42_RS05910at 1303.462 kb on - strand, within RR42_RS05910at 1303.462 kb on - strand, within RR42_RS05910at 1303.820 kb on + strandat 1304.862 kb on - strandat 1305.012 kb on + strandat 1305.013 kb on - strandat 1305.058 kb on - strandat 1305.426 kb on - strand, within RR42_RS05920at 1305.480 kb on + strand, within RR42_RS05920at 1305.596 kb on + strand, within RR42_RS05920at 1305.596 kb on + strand, within RR42_RS05920at 1305.596 kb on + strand, within RR42_RS05920at 1305.596 kb on + strand, within RR42_RS05920at 1305.597 kb on - strand, within RR42_RS05920

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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1,303,010 - RR42_RS05910 0.51 +0.0
1,303,071 + RR42_RS05910 0.54 -0.7
1,303,072 - RR42_RS05910 0.54 -0.9
1,303,225 + RR42_RS05910 0.63 -1.2
1,303,225 + RR42_RS05910 0.63 -2.2
1,303,225 + RR42_RS05910 0.63 -0.3
1,303,226 - RR42_RS05910 0.63 -0.4
1,303,461 + RR42_RS05910 0.77 -1.5
1,303,462 - RR42_RS05910 0.77 +0.2
1,303,462 - RR42_RS05910 0.77 +0.2
1,303,820 + +0.3
1,304,862 - +0.2
1,305,012 + +1.8
1,305,013 - +0.0
1,305,058 - -0.6
1,305,426 - RR42_RS05920 0.44 +0.2
1,305,480 + RR42_RS05920 0.49 -0.1
1,305,596 + RR42_RS05920 0.61 -1.2
1,305,596 + RR42_RS05920 0.61 -1.1
1,305,596 + RR42_RS05920 0.61 -0.2
1,305,596 + RR42_RS05920 0.61 -0.8
1,305,597 - RR42_RS05920 0.61 +1.3

Or see this region's nucleotide sequence