Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04990

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04985 and RR42_RS04990 are separated by 174 nucleotidesRR42_RS04990 and RR42_RS04995 are separated by 31 nucleotidesRR42_RS04995 and RR42_RS05000 are separated by 187 nucleotides RR42_RS04985: RR42_RS04985 - 2-aminoadipate aminotransferase, at 1,101,362 to 1,102,804 _RS04985 RR42_RS04990: RR42_RS04990 - hypothetical protein, at 1,102,979 to 1,103,344 _RS04990 RR42_RS04995: RR42_RS04995 - single-stranded DNA-binding protein, at 1,103,376 to 1,103,681 _RS04995 RR42_RS05000: RR42_RS05000 - hypothetical protein, at 1,103,869 to 1,105,491 _RS05000 Position (kb) 1102 1103 1104Strain fitness (log2 ratio) -2 -1 0 1 2at 1102.060 kb on + strand, within RR42_RS04985at 1102.068 kb on + strand, within RR42_RS04985at 1102.069 kb on - strand, within RR42_RS04985at 1102.069 kb on - strand, within RR42_RS04985at 1102.069 kb on - strand, within RR42_RS04985at 1102.176 kb on + strand, within RR42_RS04985at 1102.176 kb on + strand, within RR42_RS04985at 1102.177 kb on - strand, within RR42_RS04985at 1102.177 kb on - strand, within RR42_RS04985at 1102.177 kb on - strand, within RR42_RS04985at 1102.179 kb on + strand, within RR42_RS04985at 1102.179 kb on + strand, within RR42_RS04985at 1102.180 kb on - strand, within RR42_RS04985at 1102.180 kb on - strand, within RR42_RS04985at 1102.180 kb on - strand, within RR42_RS04985at 1102.273 kb on + strand, within RR42_RS04985at 1102.274 kb on - strand, within RR42_RS04985at 1102.527 kb on + strand, within RR42_RS04985at 1102.527 kb on + strand, within RR42_RS04985at 1102.527 kb on + strand, within RR42_RS04985at 1102.528 kb on - strand, within RR42_RS04985at 1102.764 kb on + strandat 1102.764 kb on + strandat 1102.841 kb on + strandat 1102.841 kb on + strandat 1102.881 kb on - strandat 1102.942 kb on + strandat 1102.942 kb on + strandat 1102.988 kb on + strandat 1102.989 kb on - strandat 1102.989 kb on - strandat 1103.125 kb on + strand, within RR42_RS04990at 1103.608 kb on + strand, within RR42_RS04995at 1103.608 kb on + strand, within RR42_RS04995at 1103.609 kb on - strand, within RR42_RS04995at 1103.609 kb on - strand, within RR42_RS04995at 1103.609 kb on - strand, within RR42_RS04995at 1103.609 kb on - strand, within RR42_RS04995at 1103.873 kb on + strandat 1103.873 kb on + strandat 1103.873 kb on + strandat 1103.873 kb on + strandat 1103.874 kb on - strandat 1103.874 kb on - strandat 1103.874 kb on - strandat 1103.874 kb on - strandat 1103.879 kb on + strandat 1103.880 kb on - strandat 1104.028 kb on - strandat 1104.029 kb on + strandat 1104.040 kb on + strand, within RR42_RS05000at 1104.040 kb on + strand, within RR42_RS05000at 1104.040 kb on + strand, within RR42_RS05000at 1104.041 kb on - strand, within RR42_RS05000at 1104.041 kb on - strand, within RR42_RS05000

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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1,102,060 + RR42_RS04985 0.48 -0.5
1,102,068 + RR42_RS04985 0.49 +0.4
1,102,069 - RR42_RS04985 0.49 -0.0
1,102,069 - RR42_RS04985 0.49 -0.2
1,102,069 - RR42_RS04985 0.49 +1.4
1,102,176 + RR42_RS04985 0.56 +0.1
1,102,176 + RR42_RS04985 0.56 -0.1
1,102,177 - RR42_RS04985 0.56 +1.5
1,102,177 - RR42_RS04985 0.56 +1.2
1,102,177 - RR42_RS04985 0.56 +0.7
1,102,179 + RR42_RS04985 0.57 +0.8
1,102,179 + RR42_RS04985 0.57 -0.1
1,102,180 - RR42_RS04985 0.57 +0.1
1,102,180 - RR42_RS04985 0.57 +0.2
1,102,180 - RR42_RS04985 0.57 +0.5
1,102,273 + RR42_RS04985 0.63 -0.2
1,102,274 - RR42_RS04985 0.63 +0.3
1,102,527 + RR42_RS04985 0.81 -0.5
1,102,527 + RR42_RS04985 0.81 +0.9
1,102,527 + RR42_RS04985 0.81 -1.8
1,102,528 - RR42_RS04985 0.81 -0.3
1,102,764 + -2.5
1,102,764 + -2.3
1,102,841 + -0.9
1,102,841 + -0.9
1,102,881 - -0.6
1,102,942 + -0.1
1,102,942 + +2.0
1,102,988 + -1.1
1,102,989 - +0.2
1,102,989 - +1.5
1,103,125 + RR42_RS04990 0.40 +1.3
1,103,608 + RR42_RS04995 0.76 +0.4
1,103,608 + RR42_RS04995 0.76 +0.2
1,103,609 - RR42_RS04995 0.76 -0.1
1,103,609 - RR42_RS04995 0.76 +0.5
1,103,609 - RR42_RS04995 0.76 +0.7
1,103,609 - RR42_RS04995 0.76 -0.6
1,103,873 + +0.0
1,103,873 + -0.2
1,103,873 + -0.9
1,103,873 + -0.8
1,103,874 - -1.5
1,103,874 - +1.1
1,103,874 - +0.2
1,103,874 - -0.3
1,103,879 + +1.5
1,103,880 - -0.1
1,104,028 - -0.4
1,104,029 + +0.5
1,104,040 + RR42_RS05000 0.11 -1.4
1,104,040 + RR42_RS05000 0.11 -0.8
1,104,040 + RR42_RS05000 0.11 -0.2
1,104,041 - RR42_RS05000 0.11 -1.8
1,104,041 - RR42_RS05000 0.11 +0.5

Or see this region's nucleotide sequence