Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04965

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
1,096,612	+		RR42_RS04960	0.60	+1.9
1,096,616	+		RR42_RS04960	0.60	+0.4
1,096,616	+		RR42_RS04960	0.60	+0.3
1,096,616	+		RR42_RS04960	0.60	+1.5
1,096,617	-		RR42_RS04960	0.60	+0.2
1,096,617	-		RR42_RS04960	0.60	-2.3
1,096,651	+		RR42_RS04960	0.65	+1.5
1,096,651	+		RR42_RS04960	0.65	+1.2
1,096,662	-		RR42_RS04960	0.67	+1.5
1,096,854	-				+0.6
1,097,074	+				+1.3
1,097,123	+				+1.5
1,097,123	+				-2.8
1,097,156	+				+0.3
1,097,156	+				-1.0
1,097,157	-				-1.0
1,097,157	-				-0.9
1,097,269	+				-1.1
1,097,270	-				+0.3
1,097,300	+				-1.5
1,097,301	-				+0.1
1,097,301	-				-1.1
1,097,301	-				+0.3
1,097,355	+				+0.2
1,097,356	-				-0.9
1,097,356	-				+1.1
1,097,359	-				-1.4
1,097,378	-				-0.1
1,097,378	-				-1.4
1,097,414	+				+0.2
1,097,421	+				+0.3
1,097,447	+				-1.9
1,097,541	+				+0.5
1,097,541	+				-0.4
1,097,655	-		RR42_RS04965	0.20	-0.5
1,097,655	-		RR42_RS04965	0.20	+0.2
1,097,806	+		RR42_RS04965	0.68	-0.3
1,097,806	+		RR42_RS04965	0.68	-0.3
1,097,806	+		RR42_RS04965	0.68	-0.1
1,097,807	-		RR42_RS04965	0.68	-1.4
1,097,929	+				+0.5
1,097,929	+				-0.1
1,097,930	-				-2.0
1,097,939	-				-0.1
1,097,947	+				+0.9
1,098,031	-				-1.7
1,098,035	+				+1.3
1,098,069	-				-0.8
1,098,069	-				-2.4
1,098,074	+				-1.9
1,098,074	+				+0.6
1,098,100	+				-2.0
1,098,100	+				-0.7
1,098,160	+				-1.0
1,098,250	+		RR42_RS04970	0.15	-3.8
1,098,250	+		RR42_RS04970	0.15	-0.9
1,098,250	+		RR42_RS04970	0.15	-0.8
1,098,250	+		RR42_RS04970	0.15	-0.2
1,098,250	+		RR42_RS04970	0.15	-1.8
1,098,251	-		RR42_RS04970	0.15	-0.6
1,098,251	-		RR42_RS04970	0.15	-0.2
1,098,251	-		RR42_RS04970	0.15	-2.7
1,098,251	-		RR42_RS04970	0.15	-1.1
1,098,251	-		RR42_RS04970	0.15	-1.2
1,098,254	+		RR42_RS04970	0.15	-0.2
1,098,255	-		RR42_RS04970	0.16	-0.7
1,098,280	+		RR42_RS04970	0.18	-0.7
1,098,280	+		RR42_RS04970	0.18	-2.0
1,098,280	+		RR42_RS04970	0.18	-0.6
1,098,281	-		RR42_RS04970	0.18	+0.5
1,098,281	-		RR42_RS04970	0.18	+0.2
1,098,281	-		RR42_RS04970	0.18	-0.8
1,098,281	-		RR42_RS04970	0.18	-0.5
1,098,428	-		RR42_RS04970	0.35	-1.0
1,098,445	+		RR42_RS04970	0.37	-1.7
1,098,675	+		RR42_RS04970	0.62	-1.5
1,098,675	+		RR42_RS04970	0.62	-2.8
1,098,675	+		RR42_RS04970	0.62	-0.5
1,098,676	-		RR42_RS04970	0.62	-1.3
1,098,676	-		RR42_RS04970	0.62	-1.0
1,098,676	-		RR42_RS04970	0.62	+0.9
1,098,701	+		RR42_RS04970	0.65	+0.3
1,098,701	+		RR42_RS04970	0.65	-0.4
1,098,701	-		RR42_RS04970	0.65	-1.3
1,098,715	+		RR42_RS04970	0.66	-1.0
1,098,715	+		RR42_RS04970	0.66	-1.7
1,098,716	-		RR42_RS04970	0.67	-0.3
1,098,901	-		RR42_RS04970	0.87	-1.1