Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03965

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03960 and RR42_RS03965 are separated by 186 nucleotidesRR42_RS03965 and RR42_RS03970 are separated by 699 nucleotides RR42_RS03960: RR42_RS03960 - ornithine cyclodeaminase, at 873,560 to 874,636 _RS03960 RR42_RS03965: RR42_RS03965 - DNA-binding protein, at 874,823 to 875,425 _RS03965 RR42_RS03970: RR42_RS03970 - glycosyl transferase family 2, at 876,125 to 876,940 _RS03970 Position (kb) 874 875 876Strain fitness (log2 ratio) -2 -1 0 1 2 3at 874.053 kb on - strand, within RR42_RS03960at 874.237 kb on + strand, within RR42_RS03960at 874.237 kb on + strand, within RR42_RS03960at 874.238 kb on - strand, within RR42_RS03960at 874.571 kb on + strandat 874.571 kb on + strandat 874.571 kb on + strandat 874.706 kb on - strandat 874.773 kb on + strandat 874.773 kb on + strandat 874.774 kb on - strandat 874.774 kb on - strandat 874.774 kb on - strandat 874.948 kb on - strand, within RR42_RS03965at 874.948 kb on - strand, within RR42_RS03965at 875.052 kb on + strand, within RR42_RS03965at 875.052 kb on + strand, within RR42_RS03965at 875.053 kb on - strand, within RR42_RS03965at 875.055 kb on + strand, within RR42_RS03965at 875.056 kb on - strand, within RR42_RS03965at 875.056 kb on - strand, within RR42_RS03965at 875.089 kb on + strand, within RR42_RS03965at 875.089 kb on + strand, within RR42_RS03965at 875.090 kb on - strand, within RR42_RS03965at 875.090 kb on - strand, within RR42_RS03965at 875.090 kb on - strand, within RR42_RS03965at 875.090 kb on - strand, within RR42_RS03965at 875.099 kb on - strand, within RR42_RS03965at 875.272 kb on + strand, within RR42_RS03965at 875.272 kb on + strand, within RR42_RS03965at 875.272 kb on + strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.276 kb on + strand, within RR42_RS03965at 875.276 kb on + strand, within RR42_RS03965at 875.276 kb on + strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.339 kb on + strand, within RR42_RS03965at 875.340 kb on - strand, within RR42_RS03965at 875.388 kb on + strandat 875.388 kb on + strandat 875.389 kb on - strandat 875.389 kb on - strandat 875.389 kb on - strandat 875.389 kb on - strandat 875.389 kb on - strandat 875.392 kb on - strandat 875.442 kb on + strandat 875.443 kb on - strandat 875.521 kb on + strandat 875.521 kb on + strandat 875.559 kb on - strandat 875.559 kb on - strandat 875.559 kb on - strandat 875.637 kb on + strandat 875.637 kb on + strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.689 kb on - strandat 875.689 kb on - strandat 875.704 kb on + strandat 875.705 kb on - strandat 875.705 kb on - strandat 875.774 kb on + strandat 875.775 kb on - strandat 875.775 kb on - strandat 875.828 kb on + strandat 875.829 kb on - strandat 875.829 kb on - strandat 875.871 kb on + strandat 875.872 kb on - strandat 875.872 kb on - strandat 875.904 kb on - strandat 875.904 kb on - strandat 875.904 kb on - strandat 875.916 kb on + strandat 875.916 kb on + strandat 875.916 kb on + strandat 875.917 kb on - strandat 875.917 kb on - strandat 876.157 kb on - strandat 876.184 kb on - strandat 876.229 kb on - strand, within RR42_RS03970at 876.229 kb on - strand, within RR42_RS03970at 876.393 kb on + strand, within RR42_RS03970at 876.393 kb on + strand, within RR42_RS03970at 876.394 kb on - strand, within RR42_RS03970at 876.394 kb on - strand, within RR42_RS03970at 876.394 kb on - strand, within RR42_RS03970

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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874,053 - RR42_RS03960 0.46 -0.1
874,237 + RR42_RS03960 0.63 +0.4
874,237 + RR42_RS03960 0.63 -1.1
874,238 - RR42_RS03960 0.63 -2.1
874,571 + -0.6
874,571 + +0.5
874,571 + +0.3
874,706 - +0.1
874,773 + -1.0
874,773 + -1.8
874,774 - -1.0
874,774 - -0.4
874,774 - -0.5
874,948 - RR42_RS03965 0.21 -0.5
874,948 - RR42_RS03965 0.21 +0.6
875,052 + RR42_RS03965 0.38 -0.4
875,052 + RR42_RS03965 0.38 -0.9
875,053 - RR42_RS03965 0.38 -0.4
875,055 + RR42_RS03965 0.38 -0.1
875,056 - RR42_RS03965 0.39 -0.6
875,056 - RR42_RS03965 0.39 +0.0
875,089 + RR42_RS03965 0.44 -0.8
875,089 + RR42_RS03965 0.44 -1.2
875,090 - RR42_RS03965 0.44 -0.3
875,090 - RR42_RS03965 0.44 -0.0
875,090 - RR42_RS03965 0.44 -0.6
875,090 - RR42_RS03965 0.44 +0.2
875,099 - RR42_RS03965 0.46 -0.0
875,272 + RR42_RS03965 0.74 -1.8
875,272 + RR42_RS03965 0.74 -0.8
875,272 + RR42_RS03965 0.74 +0.2
875,273 - RR42_RS03965 0.75 -1.4
875,273 - RR42_RS03965 0.75 +0.4
875,273 - RR42_RS03965 0.75 -0.4
875,273 - RR42_RS03965 0.75 -1.6
875,273 - RR42_RS03965 0.75 -0.3
875,276 + RR42_RS03965 0.75 -2.0
875,276 + RR42_RS03965 0.75 -0.6
875,276 + RR42_RS03965 0.75 -1.4
875,277 - RR42_RS03965 0.75 -0.6
875,277 - RR42_RS03965 0.75 -0.3
875,277 - RR42_RS03965 0.75 -0.2
875,277 - RR42_RS03965 0.75 -1.7
875,277 - RR42_RS03965 0.75 +0.4
875,277 - RR42_RS03965 0.75 -1.8
875,277 - RR42_RS03965 0.75 -0.8
875,277 - RR42_RS03965 0.75 +1.0
875,339 + RR42_RS03965 0.86 -1.2
875,340 - RR42_RS03965 0.86 -0.3
875,388 + +0.7
875,388 + -0.2
875,389 - -2.0
875,389 - -1.4
875,389 - +0.1
875,389 - +0.4
875,389 - -0.8
875,392 - -1.2
875,442 + -2.2
875,443 - -0.9
875,521 + +0.2
875,521 + -0.7
875,559 - +1.8
875,559 - +1.6
875,559 - +2.4
875,637 + -2.1
875,637 + -0.4
875,638 - +2.7
875,638 - +2.1
875,638 - +2.4
875,638 - +1.5
875,638 - -0.0
875,638 - +3.0
875,638 - +2.1
875,638 - +0.8
875,689 - +3.4
875,689 - +2.6
875,704 + -2.3
875,705 - +1.0
875,705 - +2.1
875,774 + -0.4
875,775 - +2.1
875,775 - +1.6
875,828 + -1.0
875,829 - +1.6
875,829 - +2.8
875,871 + -0.0
875,872 - +2.5
875,872 - +2.0
875,904 - +1.9
875,904 - +0.8
875,904 - +0.9
875,916 + -0.6
875,916 + +1.1
875,916 + -1.2
875,917 - +1.2
875,917 - +1.5
876,157 - +0.4
876,184 - +1.9
876,229 - RR42_RS03970 0.13 +1.6
876,229 - RR42_RS03970 0.13 +1.5
876,393 + RR42_RS03970 0.33 -0.3
876,393 + RR42_RS03970 0.33 +0.8
876,394 - RR42_RS03970 0.33 +2.6
876,394 - RR42_RS03970 0.33 +1.4
876,394 - RR42_RS03970 0.33 +0.5

Or see this region's nucleotide sequence