Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03900 and RR42_RS03905 are separated by 124 nucleotides RR42_RS03905 and RR42_RS03910 are separated by 169 nucleotides RR42_RS03910 and RR42_RS03915 overlap by 4 nucleotides
RR42_RS03900: RR42_RS03900 - membrane protein, at 859,697 to 860,821
_RS03900
RR42_RS03905: RR42_RS03905 - hypothetical protein, at 860,946 to 861,863
_RS03905
RR42_RS03910: RR42_RS03910 - (2Fe-2S)-binding protein, at 862,033 to 862,506
_RS03910
RR42_RS03915: RR42_RS03915 - hypothetical protein, at 862,503 to 864,788
_RS03915
Position (kb) 860
861
862 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 860.022 kb on + strand, within RR42_RS03900 at 860.089 kb on + strand, within RR42_RS03900 at 860.090 kb on - strand, within RR42_RS03900 at 860.184 kb on + strand, within RR42_RS03900 at 860.184 kb on + strand, within RR42_RS03900 at 860.299 kb on - strand, within RR42_RS03900 at 860.464 kb on - strand, within RR42_RS03900 at 860.464 kb on - strand, within RR42_RS03900 at 860.583 kb on + strand, within RR42_RS03900 at 860.677 kb on + strand, within RR42_RS03900 at 860.678 kb on - strand, within RR42_RS03900 at 860.678 kb on - strand, within RR42_RS03900 at 860.678 kb on - strand, within RR42_RS03900 at 860.680 kb on - strand, within RR42_RS03900 at 860.685 kb on + strand, within RR42_RS03900 at 860.866 kb on + strand at 860.866 kb on + strand at 860.866 kb on + strand at 860.866 kb on + strand at 860.866 kb on + strand at 860.866 kb on + strand at 860.866 kb on + strand at 860.866 kb on + strand at 860.866 kb on + strand at 860.866 kb on + strand at 860.867 kb on - strand at 860.867 kb on - strand at 860.867 kb on - strand at 860.867 kb on - strand at 860.867 kb on - strand at 860.867 kb on - strand at 860.867 kb on - strand at 860.867 kb on - strand at 860.868 kb on + strand at 860.869 kb on - strand at 860.870 kb on + strand at 860.871 kb on - strand at 860.947 kb on + strand at 860.947 kb on + strand at 860.948 kb on - strand at 860.954 kb on + strand at 860.954 kb on + strand at 860.954 kb on + strand at 860.955 kb on - strand at 860.955 kb on - strand at 860.988 kb on + strand at 860.988 kb on + strand at 861.064 kb on + strand, within RR42_RS03905 at 861.281 kb on + strand, within RR42_RS03905 at 861.281 kb on + strand, within RR42_RS03905 at 861.282 kb on - strand, within RR42_RS03905 at 861.282 kb on - strand, within RR42_RS03905 at 861.282 kb on - strand, within RR42_RS03905 at 861.539 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.557 kb on - strand, within RR42_RS03905 at 861.590 kb on - strand, within RR42_RS03905 at 861.784 kb on - strand at 861.785 kb on + strand at 861.785 kb on + strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.889 kb on + strand at 862.441 kb on + strand, within RR42_RS03910 at 862.442 kb on - strand, within RR42_RS03910 at 862.442 kb on - strand, within RR42_RS03910 at 862.523 kb on + strand at 862.524 kb on - strand at 862.737 kb on + strand, within RR42_RS03915 at 862.738 kb on - strand, within RR42_RS03915 at 862.814 kb on - strand, within RR42_RS03915 at 862.814 kb on - strand, within RR42_RS03915
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 860,022 + RR42_RS03900 0.29 -1.2 860,089 + RR42_RS03900 0.35 -0.0 860,090 - RR42_RS03900 0.35 +0.3 860,184 + RR42_RS03900 0.43 +0.0 860,184 + RR42_RS03900 0.43 +0.1 860,299 - RR42_RS03900 0.54 -0.2 860,464 - RR42_RS03900 0.68 -0.8 860,464 - RR42_RS03900 0.68 -1.5 860,583 + RR42_RS03900 0.79 -0.8 860,677 + RR42_RS03900 0.87 +0.7 860,678 - RR42_RS03900 0.87 +0.6 860,678 - RR42_RS03900 0.87 -1.2 860,678 - RR42_RS03900 0.87 -0.5 860,680 - RR42_RS03900 0.87 +2.0 860,685 + RR42_RS03900 0.88 +0.3 860,866 + +0.3 860,866 + -0.8 860,866 + +0.3 860,866 + +0.1 860,866 + -0.2 860,866 + -0.2 860,866 + +0.3 860,866 + +0.5 860,866 + +0.4 860,866 + -2.3 860,867 - -0.4 860,867 - -0.2 860,867 - -0.0 860,867 - -0.2 860,867 - -0.7 860,867 - -0.2 860,867 - +0.2 860,867 - +0.4 860,868 + -0.7 860,869 - +0.7 860,870 + +0.8 860,871 - -0.0 860,947 + +0.4 860,947 + -0.1 860,948 - -0.8 860,954 + +2.6 860,954 + -0.2 860,954 + -1.4 860,955 - +0.4 860,955 - -0.2 860,988 + +0.6 860,988 + -1.2 861,064 + RR42_RS03905 0.13 -0.1 861,281 + RR42_RS03905 0.36 +0.2 861,281 + RR42_RS03905 0.36 +2.6 861,282 - RR42_RS03905 0.37 -1.1 861,282 - RR42_RS03905 0.37 +1.6 861,282 - RR42_RS03905 0.37 +3.1 861,539 + RR42_RS03905 0.65 +0.3 861,556 + RR42_RS03905 0.66 -0.2 861,556 + RR42_RS03905 0.66 +0.1 861,556 + RR42_RS03905 0.66 +1.3 861,556 + RR42_RS03905 0.66 +1.6 861,556 + RR42_RS03905 0.66 +0.7 861,557 - RR42_RS03905 0.67 -0.3 861,590 - RR42_RS03905 0.70 -0.2 861,784 - +0.2 861,785 + -0.1 861,785 + -0.2 861,786 - -2.5 861,786 - -1.3 861,786 - +1.3 861,786 - -0.2 861,786 - -0.5 861,786 - +0.6 861,786 - +0.2 861,786 - -1.5 861,889 + -0.5 862,441 + RR42_RS03910 0.86 +0.0 862,442 - RR42_RS03910 0.86 -2.0 862,442 - RR42_RS03910 0.86 -1.3 862,523 + -0.0 862,524 - +0.8 862,737 + RR42_RS03915 0.10 -1.7 862,738 - RR42_RS03915 0.10 -0.2 862,814 - RR42_RS03915 0.14 -0.2 862,814 - RR42_RS03915 0.14 +0.2
Or see this region's nucleotide sequence