Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03565 and RR42_RS03570 are separated by 396 nucleotides RR42_RS03570 and RR42_RS03575 are separated by 4 nucleotides
RR42_RS03565: RR42_RS03565 - hypothetical protein, at 794,026 to 794,631
_RS03565
RR42_RS03570: RR42_RS03570 - membrane protein, at 795,028 to 795,501
_RS03570
RR42_RS03575: RR42_RS03575 - type VI secretion protein, at 795,506 to 796,849
_RS03575
Position (kb) 795
796 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 794.107 kb on - strand, within RR42_RS03565 at 794.185 kb on + strand, within RR42_RS03565 at 794.185 kb on + strand, within RR42_RS03565 at 794.186 kb on - strand, within RR42_RS03565 at 794.212 kb on - strand, within RR42_RS03565 at 794.232 kb on - strand, within RR42_RS03565 at 794.731 kb on + strand at 794.732 kb on - strand at 794.750 kb on - strand at 794.849 kb on + strand at 794.849 kb on + strand at 794.849 kb on + strand at 795.014 kb on - strand at 795.019 kb on + strand at 795.166 kb on + strand, within RR42_RS03570 at 795.167 kb on - strand, within RR42_RS03570 at 795.167 kb on - strand, within RR42_RS03570 at 795.167 kb on - strand, within RR42_RS03570 at 795.205 kb on + strand, within RR42_RS03570 at 795.205 kb on + strand, within RR42_RS03570 at 795.385 kb on + strand, within RR42_RS03570 at 795.429 kb on - strand, within RR42_RS03570 at 795.486 kb on + strand at 795.517 kb on + strand at 795.594 kb on - strand at 795.601 kb on + strand at 796.103 kb on + strand, within RR42_RS03575 at 796.148 kb on - strand, within RR42_RS03575 at 796.214 kb on + strand, within RR42_RS03575 at 796.214 kb on + strand, within RR42_RS03575 at 796.215 kb on - strand, within RR42_RS03575 at 796.298 kb on + strand, within RR42_RS03575 at 796.298 kb on + strand, within RR42_RS03575 at 796.298 kb on + strand, within RR42_RS03575 at 796.299 kb on - strand, within RR42_RS03575 at 796.330 kb on - strand, within RR42_RS03575 at 796.379 kb on + strand, within RR42_RS03575 at 796.399 kb on + strand, within RR42_RS03575 at 796.400 kb on - strand, within RR42_RS03575 at 796.400 kb on - strand, within RR42_RS03575 at 796.400 kb on - strand, within RR42_RS03575
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 794,107 - RR42_RS03565 0.13 +0.6 794,185 + RR42_RS03565 0.26 -0.8 794,185 + RR42_RS03565 0.26 -1.9 794,186 - RR42_RS03565 0.26 +2.0 794,212 - RR42_RS03565 0.31 +0.2 794,232 - RR42_RS03565 0.34 +0.4 794,731 + +0.3 794,732 - -1.3 794,750 - +0.5 794,849 + -1.6 794,849 + -1.0 794,849 + -1.1 795,014 - -1.9 795,019 + -2.9 795,166 + RR42_RS03570 0.29 -2.5 795,167 - RR42_RS03570 0.29 -0.1 795,167 - RR42_RS03570 0.29 +0.3 795,167 - RR42_RS03570 0.29 -1.3 795,205 + RR42_RS03570 0.37 -1.0 795,205 + RR42_RS03570 0.37 -2.3 795,385 + RR42_RS03570 0.75 -0.2 795,429 - RR42_RS03570 0.85 -0.9 795,486 + -1.1 795,517 + +0.3 795,594 - +1.4 795,601 + -0.7 796,103 + RR42_RS03575 0.44 -0.5 796,148 - RR42_RS03575 0.48 +0.0 796,214 + RR42_RS03575 0.53 -1.1 796,214 + RR42_RS03575 0.53 +0.0 796,215 - RR42_RS03575 0.53 -0.1 796,298 + RR42_RS03575 0.59 -0.3 796,298 + RR42_RS03575 0.59 +0.1 796,298 + RR42_RS03575 0.59 -0.9 796,299 - RR42_RS03575 0.59 -0.0 796,330 - RR42_RS03575 0.61 +1.7 796,379 + RR42_RS03575 0.65 -0.2 796,399 + RR42_RS03575 0.66 +0.1 796,400 - RR42_RS03575 0.67 -0.3 796,400 - RR42_RS03575 0.67 +0.7 796,400 - RR42_RS03575 0.67 -1.3
Or see this region's nucleotide sequence