Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03485 and RR42_RS03490 are separated by 2 nucleotides RR42_RS03490 and RR42_RS03495 are separated by 2 nucleotides
RR42_RS03485: RR42_RS03485 - type VI secretion protein, at 773,544 to 774,581
_RS03485
RR42_RS03490: RR42_RS03490 - type VI secretion protein, at 774,584 to 775,624
_RS03490
RR42_RS03495: RR42_RS03495 - type VI secretion protein, at 775,627 to 777,507
_RS03495
Position (kb) 774
775
776 Strain fitness (log2 ratio) -2
-1
0
1 at 773.646 kb on + strand at 773.646 kb on + strand at 773.945 kb on - strand, within RR42_RS03485 at 774.418 kb on + strand, within RR42_RS03485 at 774.419 kb on - strand, within RR42_RS03485 at 774.475 kb on + strand, within RR42_RS03485 at 774.475 kb on + strand, within RR42_RS03485 at 774.476 kb on - strand, within RR42_RS03485 at 774.755 kb on + strand, within RR42_RS03490 at 774.755 kb on + strand, within RR42_RS03490 at 774.756 kb on - strand, within RR42_RS03490 at 774.819 kb on + strand, within RR42_RS03490 at 774.820 kb on - strand, within RR42_RS03490 at 774.978 kb on + strand, within RR42_RS03490 at 774.978 kb on + strand, within RR42_RS03490 at 774.978 kb on + strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 775.146 kb on + strand, within RR42_RS03490 at 775.146 kb on + strand, within RR42_RS03490 at 775.215 kb on + strand, within RR42_RS03490 at 775.215 kb on + strand, within RR42_RS03490 at 775.216 kb on - strand, within RR42_RS03490 at 775.216 kb on - strand, within RR42_RS03490 at 775.560 kb on + strand at 775.628 kb on + strand at 775.629 kb on - strand at 775.803 kb on + strand at 775.804 kb on - strand at 775.829 kb on + strand, within RR42_RS03495 at 775.830 kb on - strand, within RR42_RS03495 at 776.001 kb on - strand, within RR42_RS03495 at 776.001 kb on - strand, within RR42_RS03495 at 776.001 kb on - strand, within RR42_RS03495 at 776.001 kb on - strand, within RR42_RS03495 at 776.196 kb on - strand, within RR42_RS03495 at 776.196 kb on - strand, within RR42_RS03495 at 776.264 kb on + strand, within RR42_RS03495 at 776.264 kb on + strand, within RR42_RS03495 at 776.265 kb on - strand, within RR42_RS03495 at 776.265 kb on - strand, within RR42_RS03495 at 776.282 kb on + strand, within RR42_RS03495 at 776.282 kb on + strand, within RR42_RS03495 at 776.438 kb on + strand, within RR42_RS03495 at 776.438 kb on + strand, within RR42_RS03495
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 773,646 + -0.3 773,646 + -0.2 773,945 - RR42_RS03485 0.39 +0.6 774,418 + RR42_RS03485 0.84 +0.6 774,419 - RR42_RS03485 0.84 +0.3 774,475 + RR42_RS03485 0.90 -1.8 774,475 + RR42_RS03485 0.90 +0.4 774,476 - RR42_RS03485 0.90 +0.1 774,755 + RR42_RS03490 0.16 +0.3 774,755 + RR42_RS03490 0.16 +0.8 774,756 - RR42_RS03490 0.17 +1.6 774,819 + RR42_RS03490 0.23 +0.5 774,820 - RR42_RS03490 0.23 +0.4 774,978 + RR42_RS03490 0.38 -0.6 774,978 + RR42_RS03490 0.38 +0.5 774,978 + RR42_RS03490 0.38 +0.7 774,979 - RR42_RS03490 0.38 +0.0 774,979 - RR42_RS03490 0.38 -0.7 774,979 - RR42_RS03490 0.38 -0.1 774,979 - RR42_RS03490 0.38 -0.3 775,146 + RR42_RS03490 0.54 +1.4 775,146 + RR42_RS03490 0.54 +0.9 775,215 + RR42_RS03490 0.61 +0.0 775,215 + RR42_RS03490 0.61 +0.4 775,216 - RR42_RS03490 0.61 +0.1 775,216 - RR42_RS03490 0.61 -0.8 775,560 + -0.1 775,628 + -1.8 775,629 - +0.3 775,803 + -0.6 775,804 - -0.9 775,829 + RR42_RS03495 0.11 +1.1 775,830 - RR42_RS03495 0.11 +0.3 776,001 - RR42_RS03495 0.20 -1.0 776,001 - RR42_RS03495 0.20 +0.6 776,001 - RR42_RS03495 0.20 -0.4 776,001 - RR42_RS03495 0.20 -0.7 776,196 - RR42_RS03495 0.30 -0.8 776,196 - RR42_RS03495 0.30 -0.4 776,264 + RR42_RS03495 0.34 +0.3 776,264 + RR42_RS03495 0.34 +1.1 776,265 - RR42_RS03495 0.34 -0.5 776,265 - RR42_RS03495 0.34 +0.5 776,282 + RR42_RS03495 0.35 +0.2 776,282 + RR42_RS03495 0.35 +0.4 776,438 + RR42_RS03495 0.43 +0.9 776,438 + RR42_RS03495 0.43 -0.2
Or see this region's nucleotide sequence