Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03435 and RR42_RS03440 are separated by 27 nucleotides RR42_RS03440 and RR42_RS03445 are separated by 179 nucleotides
RR42_RS03435: RR42_RS03435 - XRE family transcriptional regulator, at 763,992 to 764,801
_RS03435
RR42_RS03440: RR42_RS03440 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 764,829 to 765,587
_RS03440
RR42_RS03445: RR42_RS03445 - adenylate kinase, at 765,767 to 766,432
_RS03445
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 763.893 kb on - strand at 763.897 kb on + strand at 763.897 kb on + strand at 763.897 kb on + strand at 763.897 kb on + strand at 763.898 kb on - strand at 763.898 kb on - strand at 763.898 kb on - strand at 763.941 kb on + strand at 763.941 kb on + strand at 763.941 kb on + strand at 764.001 kb on + strand at 764.001 kb on + strand at 764.283 kb on + strand, within RR42_RS03435 at 764.284 kb on - strand, within RR42_RS03435 at 764.315 kb on + strand, within RR42_RS03435 at 764.315 kb on + strand, within RR42_RS03435 at 764.315 kb on + strand, within RR42_RS03435 at 764.315 kb on + strand, within RR42_RS03435 at 764.316 kb on - strand, within RR42_RS03435 at 764.385 kb on + strand, within RR42_RS03435 at 764.385 kb on + strand, within RR42_RS03435 at 764.386 kb on - strand, within RR42_RS03435 at 764.386 kb on - strand, within RR42_RS03435 at 764.413 kb on + strand, within RR42_RS03435 at 764.414 kb on - strand, within RR42_RS03435 at 764.501 kb on - strand, within RR42_RS03435 at 764.831 kb on - strand at 765.115 kb on + strand, within RR42_RS03440 at 765.161 kb on + strand, within RR42_RS03440 at 765.161 kb on + strand, within RR42_RS03440 at 765.161 kb on + strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.563 kb on + strand at 765.563 kb on + strand at 765.564 kb on - strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.641 kb on - strand at 765.769 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 763,893 - -0.8 763,897 + +0.9 763,897 + -0.5 763,897 + -1.7 763,897 + +0.2 763,898 - -0.0 763,898 - +0.3 763,898 - +1.4 763,941 + -1.2 763,941 + +1.0 763,941 + -0.8 764,001 + -2.3 764,001 + -0.2 764,283 + RR42_RS03435 0.36 -0.1 764,284 - RR42_RS03435 0.36 +0.3 764,315 + RR42_RS03435 0.40 -0.4 764,315 + RR42_RS03435 0.40 -0.1 764,315 + RR42_RS03435 0.40 -0.3 764,315 + RR42_RS03435 0.40 -2.9 764,316 - RR42_RS03435 0.40 -1.0 764,385 + RR42_RS03435 0.49 -0.8 764,385 + RR42_RS03435 0.49 +0.7 764,386 - RR42_RS03435 0.49 -0.6 764,386 - RR42_RS03435 0.49 +1.6 764,413 + RR42_RS03435 0.52 +2.2 764,414 - RR42_RS03435 0.52 +0.4 764,501 - RR42_RS03435 0.63 +0.4 764,831 - +0.5 765,115 + RR42_RS03440 0.38 +0.0 765,161 + RR42_RS03440 0.44 +0.0 765,161 + RR42_RS03440 0.44 +0.8 765,161 + RR42_RS03440 0.44 +0.0 765,162 - RR42_RS03440 0.44 -0.8 765,162 - RR42_RS03440 0.44 -0.1 765,162 - RR42_RS03440 0.44 -0.6 765,162 - RR42_RS03440 0.44 -0.8 765,162 - RR42_RS03440 0.44 -0.9 765,162 - RR42_RS03440 0.44 -1.8 765,162 - RR42_RS03440 0.44 -1.8 765,563 + -0.8 765,563 + +0.3 765,564 - -0.4 765,567 + +0.4 765,567 + -1.1 765,567 + +0.5 765,567 + -0.8 765,567 + +0.1 765,567 + +0.6 765,567 + +1.4 765,567 + -0.6 765,567 + +0.1 765,568 - -0.2 765,568 - -0.3 765,568 - -0.8 765,568 - -0.3 765,568 - +0.2 765,568 - -0.5 765,641 - +0.3 765,769 - -0.1 766,461 - +1.3 766,461 - -0.5 766,461 - -1.3 766,461 - -0.8 766,461 - +0.3 766,461 - +1.9 766,461 - +1.3 766,461 - -0.4
Or see this region's nucleotide sequence