Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03265 and RR42_RS03270 are separated by 354 nucleotides RR42_RS03270 and RR42_RS03275 are separated by 94 nucleotides RR42_RS03275 and RR42_RS03280 are separated by 117 nucleotides
RR42_RS03265: RR42_RS03265 - hypothetical protein, at 723,233 to 724,513
_RS03265
RR42_RS03270: RR42_RS03270 - membrane protein, at 724,868 to 725,077
_RS03270
RR42_RS03275: RR42_RS03275 - membrane protein, at 725,172 to 725,642
_RS03275
RR42_RS03280: RR42_RS03280 - LysR family transcriptional regulator, at 725,760 to 726,665
_RS03280
Position (kb) 724
725
726 Strain fitness (log2 ratio) -2
-1
0
1
2 at 723.918 kb on + strand, within RR42_RS03265 at 723.918 kb on + strand, within RR42_RS03265 at 723.919 kb on - strand, within RR42_RS03265 at 723.988 kb on - strand, within RR42_RS03265 at 724.138 kb on + strand, within RR42_RS03265 at 724.139 kb on - strand, within RR42_RS03265 at 724.293 kb on + strand, within RR42_RS03265 at 724.293 kb on + strand, within RR42_RS03265 at 724.293 kb on + strand, within RR42_RS03265 at 724.294 kb on - strand, within RR42_RS03265 at 724.294 kb on - strand, within RR42_RS03265 at 724.294 kb on - strand, within RR42_RS03265 at 724.297 kb on - strand, within RR42_RS03265 at 724.442 kb on + strand at 724.442 kb on + strand at 724.442 kb on + strand at 724.755 kb on + strand at 724.755 kb on + strand at 724.756 kb on - strand at 724.756 kb on - strand at 724.756 kb on - strand at 724.764 kb on + strand at 724.764 kb on + strand at 724.765 kb on - strand at 724.765 kb on - strand at 724.765 kb on - strand at 724.765 kb on - strand at 724.874 kb on - strand at 724.879 kb on - strand at 724.888 kb on + strand at 724.888 kb on + strand at 725.166 kb on + strand at 725.166 kb on + strand at 725.167 kb on - strand at 725.167 kb on - strand at 725.167 kb on - strand at 725.167 kb on - strand at 725.187 kb on + strand at 725.281 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.291 kb on - strand, within RR42_RS03275 at 725.291 kb on - strand, within RR42_RS03275 at 725.291 kb on - strand, within RR42_RS03275 at 725.479 kb on + strand, within RR42_RS03275 at 725.480 kb on - strand, within RR42_RS03275 at 725.612 kb on + strand at 725.613 kb on - strand at 725.667 kb on + strand at 725.667 kb on + strand at 725.667 kb on + strand at 725.667 kb on + strand at 725.668 kb on - strand at 725.700 kb on - strand at 726.067 kb on - strand, within RR42_RS03280
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 723,918 + RR42_RS03265 0.53 -0.5 723,918 + RR42_RS03265 0.53 +1.0 723,919 - RR42_RS03265 0.54 +0.3 723,988 - RR42_RS03265 0.59 +0.4 724,138 + RR42_RS03265 0.71 -0.7 724,139 - RR42_RS03265 0.71 -0.5 724,293 + RR42_RS03265 0.83 +0.0 724,293 + RR42_RS03265 0.83 +1.4 724,293 + RR42_RS03265 0.83 +0.9 724,294 - RR42_RS03265 0.83 -0.2 724,294 - RR42_RS03265 0.83 -0.1 724,294 - RR42_RS03265 0.83 -1.9 724,297 - RR42_RS03265 0.83 -1.4 724,442 + -1.0 724,442 + -0.5 724,442 + +0.0 724,755 + -0.4 724,755 + -0.3 724,756 - -0.1 724,756 - -2.3 724,756 - +1.2 724,764 + +0.3 724,764 + -0.1 724,765 - +0.9 724,765 - +0.1 724,765 - +0.4 724,765 - -1.1 724,874 - +0.0 724,879 - +1.1 724,888 + -0.6 724,888 + +0.6 725,166 + -0.3 725,166 + -0.4 725,167 - -1.0 725,167 - -0.7 725,167 - -0.8 725,167 - -1.3 725,187 + +1.4 725,281 + RR42_RS03275 0.23 -0.6 725,290 + RR42_RS03275 0.25 +0.5 725,290 + RR42_RS03275 0.25 -0.5 725,290 + RR42_RS03275 0.25 -1.5 725,290 + RR42_RS03275 0.25 -0.1 725,290 + RR42_RS03275 0.25 -0.9 725,290 + RR42_RS03275 0.25 -0.2 725,291 - RR42_RS03275 0.25 +1.0 725,291 - RR42_RS03275 0.25 +0.0 725,291 - RR42_RS03275 0.25 -0.2 725,479 + RR42_RS03275 0.65 -0.6 725,480 - RR42_RS03275 0.65 -2.2 725,612 + +0.7 725,613 - +1.0 725,667 + -0.8 725,667 + +1.6 725,667 + -1.1 725,667 + +1.0 725,668 - -0.1 725,700 - -0.6 726,067 - RR42_RS03280 0.34 +2.3
Or see this region's nucleotide sequence