Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03170
Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Vancomycin 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
700,017 | + | RR42_RS03170 | 0.21 | -1.9 | |
700,017 | + | RR42_RS03170 | 0.21 | -2.1 | |
700,018 | - | RR42_RS03170 | 0.21 | -2.3 | |
700,018 | - | RR42_RS03170 | 0.21 | +1.0 | |
700,032 | + | RR42_RS03170 | 0.28 | -1.8 | |
700,032 | + | RR42_RS03170 | 0.28 | -1.5 | |
700,086 | + | RR42_RS03170 | 0.56 | -2.1 | |
700,087 | - | RR42_RS03170 | 0.56 | -0.1 | |
700,087 | - | RR42_RS03170 | 0.56 | +0.5 | |
700,199 | - | -1.0 | |||
700,199 | - | +0.4 | |||
700,221 | - | -0.9 | |||
700,221 | - | -0.6 | |||
700,221 | - | +0.7 | |||
700,221 | - | +0.3 | |||
700,230 | + | +0.6 | |||
700,231 | - | -1.8 | |||
700,350 | - | +0.5 | |||
700,381 | + | -1.7 | |||
700,428 | + | -0.1 | |||
700,477 | + | +0.1 | |||
700,496 | - | -0.7 | |||
700,496 | - | -0.5 | |||
700,805 | + | -0.2 | |||
700,806 | - | +0.8 | |||
700,806 | - | -1.2 | |||
700,814 | + | -0.2 | |||
701,062 | + | -1.4 | |||
701,122 | + | +0.0 | |||
701,123 | - | -0.3 |
Or see this region's nucleotide sequence