Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02940 and RR42_RS02945 are separated by 24 nucleotides RR42_RS02945 and RR42_RS02950 overlap by 4 nucleotides RR42_RS02950 and RR42_RS02955 overlap by 4 nucleotides RR42_RS02955 and RR42_RS02960 overlap by 1 nucleotides
RR42_RS02940: RR42_RS02940 - phosphoribosyl-dephospho-CoA transferase, at 654,524 to 655,162
_RS02940
RR42_RS02945: RR42_RS02945 - malonate decarboxylase subunit gamma, at 655,187 to 656,005
_RS02945
RR42_RS02950: RR42_RS02950 - malonate decarboxylase subunit beta, at 656,002 to 656,853
_RS02950
RR42_RS02955: RR42_RS02955 - malonate decarboxylase subunit delta, at 656,850 to 657,164
_RS02955
RR42_RS02960: RR42_RS02960 - triphosphoribosyl-dephospho-CoA synthase, at 657,164 to 658,069
_RS02960
Position (kb) 656
657 Strain fitness (log2 ratio) -2
-1
0
1
2 at 655.401 kb on + strand, within RR42_RS02945 at 655.401 kb on + strand, within RR42_RS02945 at 655.416 kb on + strand, within RR42_RS02945 at 655.417 kb on - strand, within RR42_RS02945 at 655.417 kb on - strand, within RR42_RS02945 at 655.508 kb on + strand, within RR42_RS02945 at 655.509 kb on - strand, within RR42_RS02945 at 655.555 kb on - strand, within RR42_RS02945 at 655.871 kb on - strand, within RR42_RS02945 at 656.024 kb on + strand at 656.024 kb on + strand at 656.025 kb on - strand at 656.090 kb on + strand, within RR42_RS02950 at 656.186 kb on + strand, within RR42_RS02950 at 656.186 kb on + strand, within RR42_RS02950 at 656.264 kb on + strand, within RR42_RS02950 at 657.165 kb on + strand at 657.568 kb on - strand, within RR42_RS02960 at 657.568 kb on - strand, within RR42_RS02960 at 657.670 kb on + strand, within RR42_RS02960 at 657.671 kb on - strand, within RR42_RS02960
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 655,401 + RR42_RS02945 0.26 +0.4 655,401 + RR42_RS02945 0.26 -0.2 655,416 + RR42_RS02945 0.28 -0.6 655,417 - RR42_RS02945 0.28 -0.4 655,417 - RR42_RS02945 0.28 -0.9 655,508 + RR42_RS02945 0.39 -2.5 655,509 - RR42_RS02945 0.39 +0.6 655,555 - RR42_RS02945 0.45 +0.7 655,871 - RR42_RS02945 0.84 +1.6 656,024 + +0.6 656,024 + +0.3 656,025 - -0.8 656,090 + RR42_RS02950 0.10 -0.6 656,186 + RR42_RS02950 0.22 -0.2 656,186 + RR42_RS02950 0.22 -1.0 656,264 + RR42_RS02950 0.31 -0.4 657,165 + -0.5 657,568 - RR42_RS02960 0.45 -0.5 657,568 - RR42_RS02960 0.45 +0.4 657,670 + RR42_RS02960 0.56 +2.1 657,671 - RR42_RS02960 0.56 +0.4
Or see this region's nucleotide sequence