Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02575 and RR42_RS02580 are separated by 63 nucleotides RR42_RS02580 and RR42_RS02585 are separated by 11 nucleotides RR42_RS02585 and RR42_RS02590 overlap by 4 nucleotides
RR42_RS02575: RR42_RS02575 - ABC transporter, at 579,154 to 580,053
_RS02575
RR42_RS02580: RR42_RS02580 - amino acid ABC transporter permease, at 580,117 to 580,845
_RS02580
RR42_RS02585: RR42_RS02585 - amino acid ABC transporter permease, at 580,857 to 581,540
_RS02585
RR42_RS02590: RR42_RS02590 - amino acid ABC transporter ATP-binding protein, at 581,537 to 582,271
_RS02590
Position (kb) 580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 579.153 kb on + strand at 579.154 kb on - strand at 579.154 kb on - strand at 579.154 kb on - strand at 579.271 kb on - strand, within RR42_RS02575 at 579.271 kb on - strand, within RR42_RS02575 at 579.271 kb on - strand, within RR42_RS02575 at 579.307 kb on + strand, within RR42_RS02575 at 579.307 kb on + strand, within RR42_RS02575 at 579.308 kb on - strand, within RR42_RS02575 at 579.308 kb on - strand, within RR42_RS02575 at 579.343 kb on + strand, within RR42_RS02575 at 579.344 kb on - strand, within RR42_RS02575 at 579.344 kb on - strand, within RR42_RS02575 at 579.844 kb on + strand, within RR42_RS02575 at 579.845 kb on - strand, within RR42_RS02575 at 579.940 kb on + strand, within RR42_RS02575 at 579.940 kb on + strand, within RR42_RS02575 at 579.940 kb on + strand, within RR42_RS02575 at 580.054 kb on + strand at 580.055 kb on - strand at 580.123 kb on + strand at 580.123 kb on + strand at 580.123 kb on + strand at 580.124 kb on - strand at 580.124 kb on - strand at 580.124 kb on - strand at 580.142 kb on + strand at 580.143 kb on - strand at 580.143 kb on - strand at 580.143 kb on - strand at 580.174 kb on + strand at 580.174 kb on + strand at 580.175 kb on - strand at 580.316 kb on - strand, within RR42_RS02580 at 580.316 kb on - strand, within RR42_RS02580 at 580.316 kb on - strand, within RR42_RS02580 at 580.332 kb on + strand, within RR42_RS02580 at 580.333 kb on - strand, within RR42_RS02580 at 580.335 kb on + strand, within RR42_RS02580 at 580.570 kb on + strand, within RR42_RS02580 at 580.571 kb on - strand, within RR42_RS02580 at 580.576 kb on + strand, within RR42_RS02580 at 580.577 kb on - strand, within RR42_RS02580 at 580.577 kb on - strand, within RR42_RS02580 at 580.583 kb on + strand, within RR42_RS02580 at 580.583 kb on + strand, within RR42_RS02580 at 580.714 kb on + strand, within RR42_RS02580 at 580.714 kb on + strand, within RR42_RS02580 at 580.715 kb on - strand, within RR42_RS02580 at 580.729 kb on + strand, within RR42_RS02580 at 580.759 kb on + strand, within RR42_RS02580 at 580.760 kb on - strand, within RR42_RS02580 at 580.760 kb on - strand, within RR42_RS02580 at 580.760 kb on - strand, within RR42_RS02580 at 580.843 kb on + strand at 580.843 kb on + strand at 580.843 kb on + strand at 580.844 kb on - strand at 580.844 kb on - strand at 580.844 kb on - strand at 580.863 kb on + strand at 580.863 kb on + strand at 580.863 kb on + strand at 580.863 kb on + strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 581.037 kb on + strand, within RR42_RS02585 at 581.037 kb on + strand, within RR42_RS02585 at 581.037 kb on + strand, within RR42_RS02585 at 581.038 kb on - strand, within RR42_RS02585 at 581.038 kb on - strand, within RR42_RS02585 at 581.193 kb on + strand, within RR42_RS02585 at 581.194 kb on - strand, within RR42_RS02585 at 581.194 kb on - strand, within RR42_RS02585 at 581.196 kb on + strand, within RR42_RS02585 at 581.197 kb on - strand, within RR42_RS02585 at 581.197 kb on - strand, within RR42_RS02585 at 581.274 kb on + strand, within RR42_RS02585 at 581.367 kb on - strand, within RR42_RS02585 at 581.379 kb on + strand, within RR42_RS02585 at 581.379 kb on + strand, within RR42_RS02585 at 581.379 kb on + strand, within RR42_RS02585 at 581.380 kb on - strand, within RR42_RS02585 at 581.380 kb on - strand, within RR42_RS02585 at 581.380 kb on - strand, within RR42_RS02585 at 581.380 kb on - strand, within RR42_RS02585 at 581.416 kb on - strand, within RR42_RS02585 at 581.475 kb on + strand at 581.476 kb on - strand at 581.476 kb on - strand at 581.483 kb on + strand at 581.536 kb on + strand at 581.536 kb on + strand at 581.536 kb on + strand at 581.568 kb on - strand at 581.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 579,153 + +0.6 579,154 - -1.6 579,154 - -1.3 579,154 - -0.7 579,271 - RR42_RS02575 0.13 -1.8 579,271 - RR42_RS02575 0.13 +0.1 579,271 - RR42_RS02575 0.13 +0.4 579,307 + RR42_RS02575 0.17 +0.9 579,307 + RR42_RS02575 0.17 +0.4 579,308 - RR42_RS02575 0.17 +0.2 579,308 - RR42_RS02575 0.17 +1.8 579,343 + RR42_RS02575 0.21 +0.2 579,344 - RR42_RS02575 0.21 +0.4 579,344 - RR42_RS02575 0.21 -0.6 579,844 + RR42_RS02575 0.77 -2.0 579,845 - RR42_RS02575 0.77 -1.1 579,940 + RR42_RS02575 0.87 -0.7 579,940 + RR42_RS02575 0.87 +0.1 579,940 + RR42_RS02575 0.87 -0.0 580,054 + +0.9 580,055 - +0.6 580,123 + +1.0 580,123 + +0.0 580,123 + +0.0 580,124 - -0.2 580,124 - +0.1 580,124 - +1.0 580,142 + +0.4 580,143 - +1.3 580,143 - +1.5 580,143 - -0.7 580,174 + -0.2 580,174 + +0.3 580,175 - +0.8 580,316 - RR42_RS02580 0.27 -0.4 580,316 - RR42_RS02580 0.27 -1.0 580,316 - RR42_RS02580 0.27 +0.4 580,332 + RR42_RS02580 0.29 +0.2 580,333 - RR42_RS02580 0.30 -0.6 580,335 + RR42_RS02580 0.30 -0.3 580,570 + RR42_RS02580 0.62 +0.5 580,571 - RR42_RS02580 0.62 +0.7 580,576 + RR42_RS02580 0.63 +0.3 580,577 - RR42_RS02580 0.63 +1.2 580,577 - RR42_RS02580 0.63 -0.7 580,583 + RR42_RS02580 0.64 -0.1 580,583 + RR42_RS02580 0.64 +0.6 580,714 + RR42_RS02580 0.82 -0.1 580,714 + RR42_RS02580 0.82 +0.5 580,715 - RR42_RS02580 0.82 -0.3 580,729 + RR42_RS02580 0.84 +0.6 580,759 + RR42_RS02580 0.88 +0.3 580,760 - RR42_RS02580 0.88 +1.3 580,760 - RR42_RS02580 0.88 -0.0 580,760 - RR42_RS02580 0.88 -0.2 580,843 + -1.1 580,843 + -1.7 580,843 + -0.1 580,844 - -2.2 580,844 - -0.5 580,844 - +2.1 580,863 + -2.0 580,863 + +0.0 580,863 + +0.0 580,863 + +0.8 580,864 - +0.4 580,864 - -0.8 580,864 - -0.2 580,864 - +0.1 580,864 - -0.1 580,865 + +0.9 580,865 + -3.0 580,865 + +1.0 580,865 + -0.4 580,865 + +0.3 580,865 + +0.3 580,866 - -1.4 580,866 - +1.0 580,866 - +0.6 580,866 - -0.1 580,866 - -0.7 580,866 - -0.2 580,866 - -1.1 580,866 - +0.7 581,037 + RR42_RS02585 0.26 +0.9 581,037 + RR42_RS02585 0.26 +0.9 581,037 + RR42_RS02585 0.26 +0.2 581,038 - RR42_RS02585 0.26 +0.2 581,038 - RR42_RS02585 0.26 -0.1 581,193 + RR42_RS02585 0.49 +0.2 581,194 - RR42_RS02585 0.49 -0.4 581,194 - RR42_RS02585 0.49 +0.3 581,196 + RR42_RS02585 0.50 -0.3 581,197 - RR42_RS02585 0.50 +0.8 581,197 - RR42_RS02585 0.50 +0.2 581,274 + RR42_RS02585 0.61 -1.6 581,367 - RR42_RS02585 0.75 -0.2 581,379 + RR42_RS02585 0.76 -0.4 581,379 + RR42_RS02585 0.76 +2.1 581,379 + RR42_RS02585 0.76 -2.1 581,380 - RR42_RS02585 0.76 +0.1 581,380 - RR42_RS02585 0.76 -1.6 581,380 - RR42_RS02585 0.76 -0.2 581,380 - RR42_RS02585 0.76 -0.6 581,416 - RR42_RS02585 0.82 +0.7 581,475 + -1.2 581,476 - +0.2 581,476 - -1.4 581,483 + +0.3 581,536 + +1.7 581,536 + +0.2 581,536 + -0.3 581,568 - -1.5 581,568 - -0.6
Or see this region's nucleotide sequence