Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02495 and RR42_RS02500 are separated by 369 nucleotides RR42_RS02500 and RR42_RS02505 are separated by 73 nucleotides
RR42_RS02495: RR42_RS02495 - cardiolipin synthase; exported protein, at 559,553 to 560,872
_RS02495
RR42_RS02500: RR42_RS02500 - TetR family transcriptional regulator, at 561,242 to 561,832
_RS02500
RR42_RS02505: RR42_RS02505 - acyl-CoA dehydrogenase, at 561,906 to 563,693
_RS02505
Position (kb) 561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 560.406 kb on - strand, within RR42_RS02495 at 560.406 kb on - strand, within RR42_RS02495 at 560.406 kb on - strand, within RR42_RS02495 at 560.513 kb on + strand, within RR42_RS02495 at 560.513 kb on + strand, within RR42_RS02495 at 560.513 kb on + strand, within RR42_RS02495 at 560.532 kb on - strand, within RR42_RS02495 at 560.690 kb on + strand, within RR42_RS02495 at 560.819 kb on + strand at 560.819 kb on + strand at 560.819 kb on + strand at 560.820 kb on - strand at 560.820 kb on - strand at 560.820 kb on - strand at 560.821 kb on + strand at 560.821 kb on + strand at 560.821 kb on + strand at 560.821 kb on + strand at 560.821 kb on + strand at 560.821 kb on + strand at 560.822 kb on - strand at 560.822 kb on - strand at 560.906 kb on + strand at 560.907 kb on - strand at 560.907 kb on - strand at 561.065 kb on - strand at 561.129 kb on + strand at 561.129 kb on + strand at 561.130 kb on - strand at 561.142 kb on + strand at 561.142 kb on + strand at 561.552 kb on - strand, within RR42_RS02500 at 561.552 kb on - strand, within RR42_RS02500 at 561.735 kb on + strand, within RR42_RS02500 at 561.805 kb on + strand at 561.821 kb on + strand at 561.826 kb on + strand at 561.826 kb on + strand at 561.915 kb on + strand at 561.915 kb on + strand at 561.915 kb on + strand at 562.103 kb on + strand, within RR42_RS02505 at 562.108 kb on - strand, within RR42_RS02505 at 562.108 kb on - strand, within RR42_RS02505 at 562.108 kb on - strand, within RR42_RS02505 at 562.155 kb on + strand, within RR42_RS02505 at 562.155 kb on + strand, within RR42_RS02505 at 562.165 kb on - strand, within RR42_RS02505 at 562.165 kb on - strand, within RR42_RS02505 at 562.206 kb on + strand, within RR42_RS02505 at 562.226 kb on + strand, within RR42_RS02505 at 562.248 kb on + strand, within RR42_RS02505 at 562.248 kb on + strand, within RR42_RS02505 at 562.249 kb on - strand, within RR42_RS02505 at 562.249 kb on - strand, within RR42_RS02505 at 562.249 kb on - strand, within RR42_RS02505 at 562.286 kb on - strand, within RR42_RS02505 at 562.288 kb on - strand, within RR42_RS02505 at 562.312 kb on - strand, within RR42_RS02505 at 562.356 kb on + strand, within RR42_RS02505 at 562.356 kb on + strand, within RR42_RS02505 at 562.357 kb on - strand, within RR42_RS02505 at 562.357 kb on - strand, within RR42_RS02505 at 562.357 kb on - strand, within RR42_RS02505 at 562.474 kb on - strand, within RR42_RS02505
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 560,406 - RR42_RS02495 0.65 +0.4 560,406 - RR42_RS02495 0.65 -0.3 560,406 - RR42_RS02495 0.65 +1.2 560,513 + RR42_RS02495 0.73 +1.6 560,513 + RR42_RS02495 0.73 +1.1 560,513 + RR42_RS02495 0.73 +1.4 560,532 - RR42_RS02495 0.74 +0.4 560,690 + RR42_RS02495 0.86 +0.5 560,819 + +1.1 560,819 + +1.9 560,819 + +0.5 560,820 - +0.4 560,820 - +1.1 560,820 - +1.1 560,821 + -0.1 560,821 + +0.6 560,821 + +0.6 560,821 + -1.6 560,821 + +0.4 560,821 + -0.7 560,822 - +0.0 560,822 - -0.4 560,906 + +0.4 560,907 - -1.3 560,907 - +0.4 561,065 - +0.6 561,129 + +0.4 561,129 + -0.1 561,130 - +0.3 561,142 + -0.1 561,142 + -0.2 561,552 - RR42_RS02500 0.52 -1.0 561,552 - RR42_RS02500 0.52 -0.7 561,735 + RR42_RS02500 0.83 -0.1 561,805 + +0.3 561,821 + -0.2 561,826 + -0.7 561,826 + +1.6 561,915 + +0.0 561,915 + -0.9 561,915 + -1.1 562,103 + RR42_RS02505 0.11 +0.1 562,108 - RR42_RS02505 0.11 +2.2 562,108 - RR42_RS02505 0.11 +0.1 562,108 - RR42_RS02505 0.11 -1.0 562,155 + RR42_RS02505 0.14 -2.8 562,155 + RR42_RS02505 0.14 +0.3 562,165 - RR42_RS02505 0.14 -1.6 562,165 - RR42_RS02505 0.14 +0.7 562,206 + RR42_RS02505 0.17 -0.4 562,226 + RR42_RS02505 0.18 +0.5 562,248 + RR42_RS02505 0.19 +0.8 562,248 + RR42_RS02505 0.19 +0.8 562,249 - RR42_RS02505 0.19 +0.0 562,249 - RR42_RS02505 0.19 +0.6 562,249 - RR42_RS02505 0.19 -0.4 562,286 - RR42_RS02505 0.21 -1.0 562,288 - RR42_RS02505 0.21 +2.6 562,312 - RR42_RS02505 0.23 -2.3 562,356 + RR42_RS02505 0.25 -0.1 562,356 + RR42_RS02505 0.25 +0.6 562,357 - RR42_RS02505 0.25 +0.8 562,357 - RR42_RS02505 0.25 -0.2 562,357 - RR42_RS02505 0.25 -0.9 562,474 - RR42_RS02505 0.32 -0.9
Or see this region's nucleotide sequence