Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01715 and RR42_RS01720 are separated by 214 nucleotides RR42_RS01720 and RR42_RS01725 are separated by 123 nucleotides RR42_RS01725 and RR42_RS01730 are separated by 126 nucleotides
RR42_RS01715: RR42_RS01715 - ATP-dependent DNA helicase, at 391,569 to 393,677
_RS01715
RR42_RS01720: RR42_RS01720 - membrane protein, at 393,892 to 394,446
_RS01720
RR42_RS01725: RR42_RS01725 - thioredoxin, at 394,570 to 395,073
_RS01725
RR42_RS01730: RR42_RS01730 - membrane protein, at 395,200 to 395,808
_RS01730
Position (kb) 393
394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 392.911 kb on + strand, within RR42_RS01715 at 392.911 kb on + strand, within RR42_RS01715 at 392.912 kb on - strand, within RR42_RS01715 at 392.989 kb on + strand, within RR42_RS01715 at 392.990 kb on - strand, within RR42_RS01715 at 393.043 kb on + strand, within RR42_RS01715 at 393.044 kb on - strand, within RR42_RS01715 at 393.044 kb on - strand, within RR42_RS01715 at 393.054 kb on + strand, within RR42_RS01715 at 393.054 kb on + strand, within RR42_RS01715 at 393.085 kb on + strand, within RR42_RS01715 at 393.086 kb on - strand, within RR42_RS01715 at 393.149 kb on - strand, within RR42_RS01715 at 393.293 kb on - strand, within RR42_RS01715 at 393.607 kb on + strand at 393.779 kb on - strand at 393.779 kb on - strand at 393.779 kb on - strand at 393.779 kb on - strand at 393.834 kb on - strand at 394.104 kb on - strand, within RR42_RS01720 at 394.104 kb on - strand, within RR42_RS01720 at 394.476 kb on + strand at 394.476 kb on + strand at 394.482 kb on - strand at 394.621 kb on + strand, within RR42_RS01725 at 394.626 kb on - strand, within RR42_RS01725 at 394.626 kb on - strand, within RR42_RS01725 at 394.634 kb on + strand, within RR42_RS01725 at 394.635 kb on - strand, within RR42_RS01725 at 394.844 kb on + strand, within RR42_RS01725 at 394.845 kb on - strand, within RR42_RS01725 at 394.845 kb on - strand, within RR42_RS01725 at 394.845 kb on - strand, within RR42_RS01725 at 394.845 kb on - strand, within RR42_RS01725 at 394.845 kb on - strand, within RR42_RS01725 at 394.845 kb on - strand, within RR42_RS01725 at 394.869 kb on - strand, within RR42_RS01725 at 394.869 kb on - strand, within RR42_RS01725 at 394.869 kb on - strand, within RR42_RS01725 at 395.032 kb on - strand at 395.137 kb on + strand at 395.137 kb on + strand at 395.137 kb on + strand at 395.138 kb on - strand at 395.138 kb on - strand at 395.162 kb on + strand at 395.163 kb on - strand at 395.168 kb on - strand at 395.171 kb on - strand at 395.357 kb on - strand, within RR42_RS01730
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 392,911 + RR42_RS01715 0.64 +0.1 392,911 + RR42_RS01715 0.64 +0.6 392,912 - RR42_RS01715 0.64 -0.6 392,989 + RR42_RS01715 0.67 -0.3 392,990 - RR42_RS01715 0.67 +0.3 393,043 + RR42_RS01715 0.70 -1.2 393,044 - RR42_RS01715 0.70 +0.6 393,044 - RR42_RS01715 0.70 +1.2 393,054 + RR42_RS01715 0.70 -1.2 393,054 + RR42_RS01715 0.70 +5.2 393,085 + RR42_RS01715 0.72 +0.0 393,086 - RR42_RS01715 0.72 -0.5 393,149 - RR42_RS01715 0.75 +0.2 393,293 - RR42_RS01715 0.82 +0.4 393,607 + -1.8 393,779 - +1.5 393,779 - +0.0 393,779 - -1.0 393,779 - -0.2 393,834 - -0.9 394,104 - RR42_RS01720 0.38 -0.8 394,104 - RR42_RS01720 0.38 -1.4 394,476 + -2.9 394,476 + +0.4 394,482 - +0.4 394,621 + RR42_RS01725 0.10 +1.0 394,626 - RR42_RS01725 0.11 +1.4 394,626 - RR42_RS01725 0.11 +0.8 394,634 + RR42_RS01725 0.13 -0.3 394,635 - RR42_RS01725 0.13 -0.3 394,844 + RR42_RS01725 0.54 -0.0 394,845 - RR42_RS01725 0.55 +0.6 394,845 - RR42_RS01725 0.55 +0.3 394,845 - RR42_RS01725 0.55 -2.1 394,845 - RR42_RS01725 0.55 -0.3 394,845 - RR42_RS01725 0.55 +1.3 394,845 - RR42_RS01725 0.55 +0.3 394,869 - RR42_RS01725 0.59 -1.4 394,869 - RR42_RS01725 0.59 +0.6 394,869 - RR42_RS01725 0.59 +0.1 395,032 - -0.6 395,137 + +0.1 395,137 + +0.1 395,137 + -0.3 395,138 - +0.1 395,138 - -0.5 395,162 + +1.0 395,163 - +0.3 395,168 - +0.5 395,171 - +0.6 395,357 - RR42_RS01730 0.26 +0.1
Or see this region's nucleotide sequence