Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01090 and RR42_RS01095 are separated by 214 nucleotides RR42_RS01095 and RR42_RS01100 are separated by 35 nucleotides RR42_RS01100 and RR42_RS01105 are separated by 94 nucleotides RR42_RS01105 and RR42_RS01110 are separated by 0 nucleotides RR42_RS01110 and RR42_RS01115 overlap by 4 nucleotides
RR42_RS01090: RR42_RS01090 - histidine kinase, at 254,273 to 255,676
_RS01090
RR42_RS01095: RR42_RS01095 - membrane protein, at 255,891 to 256,370
_RS01095
RR42_RS01100: RR42_RS01100 - LysR family transcriptional regulator, at 256,406 to 257,341
_RS01100
RR42_RS01105: RR42_RS01105 - membrane protein, at 257,436 to 257,948
_RS01105
RR42_RS01110: RR42_RS01110 - hypothetical protein, at 257,949 to 258,176
_RS01110
RR42_RS01115: RR42_RS01115 - hypothetical protein, at 258,173 to 258,400
_RS01115
Position (kb) 256
257
258 Strain fitness (log2 ratio) -2
-1
0
1 at 255.670 kb on + strand at 255.671 kb on - strand at 255.688 kb on - strand at 255.688 kb on - strand at 255.844 kb on - strand at 255.844 kb on - strand at 255.856 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 256.074 kb on - strand, within RR42_RS01095 at 256.394 kb on + strand at 256.407 kb on + strand at 256.407 kb on + strand at 256.407 kb on + strand at 256.408 kb on - strand at 256.480 kb on + strand at 256.480 kb on + strand at 256.481 kb on - strand at 256.830 kb on + strand, within RR42_RS01100 at 256.831 kb on - strand, within RR42_RS01100 at 256.831 kb on - strand, within RR42_RS01100 at 257.025 kb on + strand, within RR42_RS01100 at 257.026 kb on - strand, within RR42_RS01100 at 257.273 kb on - strand at 257.273 kb on - strand at 257.273 kb on - strand at 257.273 kb on - strand at 257.350 kb on + strand at 257.350 kb on + strand at 257.360 kb on - strand at 257.392 kb on - strand at 257.706 kb on + strand, within RR42_RS01105 at 257.707 kb on - strand, within RR42_RS01105 at 257.707 kb on - strand, within RR42_RS01105 at 257.707 kb on - strand, within RR42_RS01105 at 257.707 kb on - strand, within RR42_RS01105 at 257.712 kb on - strand, within RR42_RS01105 at 257.712 kb on - strand, within RR42_RS01105 at 257.712 kb on - strand, within RR42_RS01105 at 257.757 kb on - strand, within RR42_RS01105
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 255,670 + +1.1 255,671 - +0.3 255,688 - +0.2 255,688 - +1.0 255,844 - -1.1 255,844 - -1.1 255,856 - +0.0 255,884 - -1.4 255,884 - -0.4 255,884 - +0.4 255,884 - -0.1 256,074 - RR42_RS01095 0.38 -0.8 256,394 + -2.4 256,407 + -0.1 256,407 + -2.0 256,407 + -0.2 256,408 - -0.1 256,480 + -0.6 256,480 + +0.3 256,481 - -0.3 256,830 + RR42_RS01100 0.45 -0.9 256,831 - RR42_RS01100 0.45 -0.7 256,831 - RR42_RS01100 0.45 -1.4 257,025 + RR42_RS01100 0.66 +0.6 257,026 - RR42_RS01100 0.66 +0.4 257,273 - +0.6 257,273 - +0.3 257,273 - -0.6 257,273 - -0.8 257,350 + -1.4 257,350 + +0.3 257,360 - -0.5 257,392 - +1.5 257,706 + RR42_RS01105 0.53 -1.8 257,707 - RR42_RS01105 0.53 +0.8 257,707 - RR42_RS01105 0.53 +0.0 257,707 - RR42_RS01105 0.53 +1.2 257,707 - RR42_RS01105 0.53 +0.7 257,712 - RR42_RS01105 0.54 -1.5 257,712 - RR42_RS01105 0.54 +0.0 257,712 - RR42_RS01105 0.54 -0.2 257,757 - RR42_RS01105 0.63 +0.0
Or see this region's nucleotide sequence