Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00575

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00565 and RR42_RS00570 are separated by 69 nucleotidesRR42_RS00570 and RR42_RS00575 are separated by 164 nucleotidesRR42_RS00575 and RR42_RS00580 are separated by 202 nucleotides RR42_RS00565: RR42_RS00565 - penicillin-binding protein, at 149,678 to 151,996 _RS00565 RR42_RS00570: RR42_RS00570 - rod shape-determining protein MreD, at 152,066 to 152,578 _RS00570 RR42_RS00575: RR42_RS00575 - rod shape-determining protein MreC, at 152,743 to 153,615 _RS00575 RR42_RS00580: RR42_RS00580 - rod shape-determining protein MreB, at 153,818 to 154,861 _RS00580 Position (kb) 152 153 154Strain fitness (log2 ratio) -1 0 1 2at 152.000 kb on - strandat 152.000 kb on - strandat 152.000 kb on - strandat 152.563 kb on - strandat 152.563 kb on - strandat 153.552 kb on - strandat 153.609 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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152,000 - -1.5
152,000 - +0.0
152,000 - +2.6
152,563 - -0.3
152,563 - -0.7
153,552 - +0.8
153,609 - +0.2

Or see this region's nucleotide sequence