Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00190 and RR42_RS00195 are separated by 131 nucleotides RR42_RS00195 and RR42_RS00200 are separated by 58 nucleotides
RR42_RS00190: RR42_RS00190 - ABC transporter substrate-binding protein, at 62,998 to 64,179
_RS00190
RR42_RS00195: RR42_RS00195 - ABC transporter permease, at 64,311 to 65,240
_RS00195
RR42_RS00200: RR42_RS00200 - ABC transporter permease, at 65,299 to 66,429
_RS00200
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.412 kb on + strand, within RR42_RS00190 at 63.413 kb on - strand, within RR42_RS00190 at 63.420 kb on + strand, within RR42_RS00190 at 63.421 kb on - strand, within RR42_RS00190 at 63.421 kb on - strand, within RR42_RS00190 at 63.421 kb on - strand, within RR42_RS00190 at 63.503 kb on - strand, within RR42_RS00190 at 63.553 kb on - strand, within RR42_RS00190 at 63.559 kb on + strand, within RR42_RS00190 at 63.682 kb on + strand, within RR42_RS00190 at 63.683 kb on - strand, within RR42_RS00190 at 63.787 kb on + strand, within RR42_RS00190 at 63.787 kb on + strand, within RR42_RS00190 at 63.787 kb on + strand, within RR42_RS00190 at 63.788 kb on - strand, within RR42_RS00190 at 63.788 kb on - strand, within RR42_RS00190 at 63.835 kb on - strand, within RR42_RS00190 at 63.889 kb on + strand, within RR42_RS00190 at 63.889 kb on + strand, within RR42_RS00190 at 63.890 kb on - strand, within RR42_RS00190 at 63.925 kb on + strand, within RR42_RS00190 at 63.925 kb on + strand, within RR42_RS00190 at 64.099 kb on + strand at 64.099 kb on + strand at 64.099 kb on + strand at 64.099 kb on + strand at 64.100 kb on - strand at 64.100 kb on - strand at 64.100 kb on - strand at 64.100 kb on - strand at 64.144 kb on + strand at 64.178 kb on - strand at 64.329 kb on + strand at 64.330 kb on - strand at 64.363 kb on - strand at 64.385 kb on + strand at 64.385 kb on + strand at 64.472 kb on + strand, within RR42_RS00195 at 64.616 kb on + strand, within RR42_RS00195 at 64.616 kb on + strand, within RR42_RS00195 at 64.617 kb on - strand, within RR42_RS00195 at 64.823 kb on + strand, within RR42_RS00195 at 64.972 kb on - strand, within RR42_RS00195 at 65.149 kb on - strand at 65.335 kb on + strand at 65.335 kb on + strand at 65.336 kb on - strand at 65.524 kb on + strand, within RR42_RS00200 at 65.569 kb on + strand, within RR42_RS00200 at 65.569 kb on + strand, within RR42_RS00200 at 65.656 kb on - strand, within RR42_RS00200 at 65.656 kb on - strand, within RR42_RS00200 at 65.659 kb on + strand, within RR42_RS00200 at 65.660 kb on - strand, within RR42_RS00200 at 65.660 kb on - strand, within RR42_RS00200 at 65.785 kb on + strand, within RR42_RS00200 at 65.786 kb on - strand, within RR42_RS00200 at 65.900 kb on - strand, within RR42_RS00200 at 65.908 kb on - strand, within RR42_RS00200 at 65.956 kb on + strand, within RR42_RS00200 at 65.957 kb on - strand, within RR42_RS00200 at 65.957 kb on - strand, within RR42_RS00200 at 66.087 kb on + strand, within RR42_RS00200 at 66.154 kb on + strand, within RR42_RS00200 at 66.154 kb on + strand, within RR42_RS00200
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 63,412 + RR42_RS00190 0.35 -1.1 63,413 - RR42_RS00190 0.35 -1.1 63,420 + RR42_RS00190 0.36 -1.8 63,421 - RR42_RS00190 0.36 -1.2 63,421 - RR42_RS00190 0.36 -0.4 63,421 - RR42_RS00190 0.36 -0.7 63,503 - RR42_RS00190 0.43 -0.2 63,553 - RR42_RS00190 0.47 -0.6 63,559 + RR42_RS00190 0.47 +0.3 63,682 + RR42_RS00190 0.58 -0.7 63,683 - RR42_RS00190 0.58 -1.1 63,787 + RR42_RS00190 0.67 -0.5 63,787 + RR42_RS00190 0.67 +1.1 63,787 + RR42_RS00190 0.67 +0.8 63,788 - RR42_RS00190 0.67 -0.1 63,788 - RR42_RS00190 0.67 +0.5 63,835 - RR42_RS00190 0.71 +0.9 63,889 + RR42_RS00190 0.75 -1.5 63,889 + RR42_RS00190 0.75 +0.6 63,890 - RR42_RS00190 0.75 +0.8 63,925 + RR42_RS00190 0.78 +0.8 63,925 + RR42_RS00190 0.78 +0.2 64,099 + -1.2 64,099 + -1.4 64,099 + +0.6 64,099 + +0.6 64,100 - +1.3 64,100 - +1.2 64,100 - +0.2 64,100 - +1.0 64,144 + -0.3 64,178 - -0.5 64,329 + +1.3 64,330 - -0.6 64,363 - +1.0 64,385 + +0.0 64,385 + +0.2 64,472 + RR42_RS00195 0.17 -2.8 64,616 + RR42_RS00195 0.33 +0.3 64,616 + RR42_RS00195 0.33 -1.2 64,617 - RR42_RS00195 0.33 -0.5 64,823 + RR42_RS00195 0.55 -0.2 64,972 - RR42_RS00195 0.71 -0.6 65,149 - -1.0 65,335 + +2.6 65,335 + -0.2 65,336 - +0.4 65,524 + RR42_RS00200 0.20 +0.8 65,569 + RR42_RS00200 0.24 -1.1 65,569 + RR42_RS00200 0.24 +0.0 65,656 - RR42_RS00200 0.32 +0.2 65,656 - RR42_RS00200 0.32 -0.6 65,659 + RR42_RS00200 0.32 -1.2 65,660 - RR42_RS00200 0.32 -0.4 65,660 - RR42_RS00200 0.32 -1.6 65,785 + RR42_RS00200 0.43 -2.0 65,786 - RR42_RS00200 0.43 -0.4 65,900 - RR42_RS00200 0.53 -0.7 65,908 - RR42_RS00200 0.54 +0.4 65,956 + RR42_RS00200 0.58 -2.2 65,957 - RR42_RS00200 0.58 +0.5 65,957 - RR42_RS00200 0.58 -1.3 66,087 + RR42_RS00200 0.70 +0.1 66,154 + RR42_RS00200 0.76 +2.0 66,154 + RR42_RS00200 0.76 -0.1
Or see this region's nucleotide sequence