Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5797

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5796 and Pf1N1B4_5797 are separated by 43 nucleotidesPf1N1B4_5797 and Pf1N1B4_5798 are separated by 191 nucleotides Pf1N1B4_5796 - MutT/nudix family protein, at 232,394 to 232,756 _5796 Pf1N1B4_5797 - 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25), at 232,800 to 233,573 _5797 Pf1N1B4_5798 - 2-chlorobenzoate 1,2-dioxygenase reductase component, at 233,765 to 234,778 _5798 Position (kb) 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2at 231.853 kb on + strandat 231.853 kb on + strandat 231.853 kb on + strandat 231.854 kb on - strandat 231.863 kb on + strandat 231.888 kb on + strandat 231.889 kb on - strandat 231.971 kb on - strandat 231.971 kb on - strandat 231.971 kb on - strandat 232.040 kb on - strandat 232.172 kb on + strandat 232.173 kb on - strandat 232.173 kb on - strandat 232.216 kb on + strandat 232.216 kb on + strandat 232.217 kb on - strandat 232.217 kb on - strandat 232.222 kb on - strandat 232.222 kb on - strandat 232.347 kb on - strandat 232.401 kb on + strandat 232.401 kb on + strandat 232.402 kb on - strandat 232.532 kb on + strandat 232.532 kb on + strand, within Pf1N1B4_5796at 232.567 kb on + strandat 232.568 kb on + strand, within Pf1N1B4_5796at 232.569 kb on - strand, within Pf1N1B4_5796at 232.569 kb on - strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strandat 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.608 kb on + strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.609 kb on - strand, within Pf1N1B4_5796at 232.610 kb on + strand, within Pf1N1B4_5796at 232.611 kb on - strand, within Pf1N1B4_5796at 232.611 kb on - strand, within Pf1N1B4_5796at 232.611 kb on - strand, within Pf1N1B4_5796at 232.611 kb on - strand, within Pf1N1B4_5796at 232.611 kb on - strandat 232.755 kb on - strandat 232.846 kb on + strandat 232.847 kb on - strandat 232.847 kb on - strandat 232.847 kb on - strandat 232.847 kb on - strandat 233.380 kb on + strand, within Pf1N1B4_5797at 233.409 kb on + strand, within Pf1N1B4_5797at 233.409 kb on + strand, within Pf1N1B4_5797at 233.410 kb on - strand, within Pf1N1B4_5797at 233.577 kb on + strandat 233.578 kb on - strandat 233.605 kb on + strandat 233.606 kb on - strandat 233.606 kb on - strandat 233.628 kb on + strandat 233.629 kb on - strandat 233.685 kb on + strandat 233.797 kb on - strandat 233.874 kb on + strand, within Pf1N1B4_5798at 233.928 kb on + strand, within Pf1N1B4_5798at 234.171 kb on - strand, within Pf1N1B4_5798at 234.175 kb on - strand, within Pf1N1B4_5798at 234.175 kb on - strand, within Pf1N1B4_5798at 234.357 kb on + strandat 234.357 kb on + strand, within Pf1N1B4_5798at 234.358 kb on - strand, within Pf1N1B4_5798at 234.358 kb on - strand, within Pf1N1B4_5798at 234.460 kb on - strand, within Pf1N1B4_5798

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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231,853 + +0.1
231,853 + +0.3
231,853 + -0.1
231,854 - +0.1
231,863 + -0.5
231,888 + -2.1
231,889 - +0.2
231,971 - -1.1
231,971 - -0.5
231,971 - -0.5
232,040 - +0.1
232,172 + +0.5
232,173 - -0.5
232,173 - +1.1
232,216 + -1.1
232,216 + +0.5
232,217 - -0.5
232,217 - -1.8
232,222 - +1.3
232,222 - +0.5
232,347 - +1.5
232,401 + +1.3
232,401 + -0.5
232,402 - -0.5
232,532 + +0.8
232,532 + Pf1N1B4_5796 0.38 -0.5
232,567 + -0.5
232,568 + Pf1N1B4_5796 0.48 +0.1
232,569 - Pf1N1B4_5796 0.48 +0.2
232,569 - Pf1N1B4_5796 0.48 -0.5
232,608 + Pf1N1B4_5796 0.59 +0.5
232,608 + Pf1N1B4_5796 0.59 -1.5
232,608 + Pf1N1B4_5796 0.59 +0.1
232,608 + Pf1N1B4_5796 0.59 +0.2
232,608 + Pf1N1B4_5796 0.59 +0.5
232,608 + Pf1N1B4_5796 0.59 +1.5
232,608 + -0.5
232,608 + Pf1N1B4_5796 0.59 +0.1
232,608 + Pf1N1B4_5796 0.59 +0.8
232,608 + Pf1N1B4_5796 0.59 -0.5
232,608 + Pf1N1B4_5796 0.59 +0.5
232,608 + Pf1N1B4_5796 0.59 +2.1
232,608 + Pf1N1B4_5796 0.59 -0.5
232,608 + Pf1N1B4_5796 0.59 -0.5
232,608 + Pf1N1B4_5796 0.59 +0.1
232,609 - Pf1N1B4_5796 0.59 -0.5
232,609 - Pf1N1B4_5796 0.59 -1.1
232,609 - Pf1N1B4_5796 0.59 +1.5
232,609 - Pf1N1B4_5796 0.59 +0.6
232,609 - Pf1N1B4_5796 0.59 -0.5
232,609 - Pf1N1B4_5796 0.59 +1.8
232,609 - Pf1N1B4_5796 0.59 -1.1
232,609 - Pf1N1B4_5796 0.59 +0.2
232,609 - Pf1N1B4_5796 0.59 -0.5
232,609 - Pf1N1B4_5796 0.59 -1.5
232,609 - Pf1N1B4_5796 0.59 -0.5
232,609 - Pf1N1B4_5796 0.59 -0.2
232,609 - Pf1N1B4_5796 0.59 +1.9
232,610 + Pf1N1B4_5796 0.60 -0.5
232,611 - Pf1N1B4_5796 0.60 -0.1
232,611 - Pf1N1B4_5796 0.60 +1.5
232,611 - Pf1N1B4_5796 0.60 +1.5
232,611 - Pf1N1B4_5796 0.60 +0.5
232,611 - +1.1
232,755 - +0.5
232,846 + +2.5
232,847 - +1.8
232,847 - -2.1
232,847 - +1.1
232,847 - -0.5
233,380 + Pf1N1B4_5797 0.75 +1.8
233,409 + Pf1N1B4_5797 0.79 +0.5
233,409 + Pf1N1B4_5797 0.79 +1.7
233,410 - Pf1N1B4_5797 0.79 -0.8
233,577 + +0.5
233,578 - +0.5
233,605 + -0.5
233,606 - -1.5
233,606 - +1.5
233,628 + +1.5
233,629 - -0.5
233,685 + +0.8
233,797 - -2.1
233,874 + Pf1N1B4_5798 0.11 -0.2
233,928 + Pf1N1B4_5798 0.16 +1.1
234,171 - Pf1N1B4_5798 0.40 -1.1
234,175 - Pf1N1B4_5798 0.40 -1.5
234,175 - Pf1N1B4_5798 0.40 +2.1
234,357 + -2.1
234,357 + Pf1N1B4_5798 0.58 -0.5
234,358 - Pf1N1B4_5798 0.58 +0.1
234,358 - Pf1N1B4_5798 0.58 -2.1
234,460 - Pf1N1B4_5798 0.69 +0.8

Or see this region's nucleotide sequence