Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5478 and Pf1N1B4_5479 are separated by 951 nucleotides Pf1N1B4_5479 and Pf1N1B4_5480 are separated by 0 nucleotides
Pf1N1B4_5478 - hypothetical protein, at 229,293 to 229,448
_5478
Pf1N1B4_5479 - hypothetical protein, at 230,400 to 230,759
_5479
Pf1N1B4_5480 - hypothetical protein, at 230,760 to 231,002
_5480
Position (kb) 230
231 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 229.944 kb on - strand at 229.948 kb on - strand at 229.968 kb on - strand at 230.049 kb on - strand at 230.056 kb on - strand at 230.151 kb on + strand at 230.151 kb on + strand at 230.152 kb on - strand at 230.255 kb on + strand at 230.273 kb on + strand at 230.274 kb on - strand at 230.348 kb on + strand at 230.348 kb on + strand at 230.348 kb on + strand at 230.349 kb on - strand at 230.549 kb on + strand, within Pf1N1B4_5479 at 230.550 kb on - strand, within Pf1N1B4_5479 at 230.550 kb on - strand, within Pf1N1B4_5479 at 230.550 kb on - strand, within Pf1N1B4_5479 at 230.553 kb on + strand, within Pf1N1B4_5479 at 230.554 kb on - strand, within Pf1N1B4_5479 at 230.554 kb on - strand at 230.554 kb on - strand, within Pf1N1B4_5479 at 230.577 kb on + strand, within Pf1N1B4_5479 at 230.577 kb on + strand, within Pf1N1B4_5479 at 230.577 kb on + strand, within Pf1N1B4_5479 at 230.577 kb on + strand, within Pf1N1B4_5479 at 230.577 kb on + strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.578 kb on - strand, within Pf1N1B4_5479 at 230.643 kb on + strand, within Pf1N1B4_5479 at 230.697 kb on - strand, within Pf1N1B4_5479 at 230.697 kb on - strand, within Pf1N1B4_5479 at 230.697 kb on - strand, within Pf1N1B4_5479 at 230.697 kb on - strand, within Pf1N1B4_5479 at 230.759 kb on + strand at 230.759 kb on + strand at 230.760 kb on - strand at 230.857 kb on + strand, within Pf1N1B4_5480 at 230.857 kb on + strand, within Pf1N1B4_5480 at 230.857 kb on + strand, within Pf1N1B4_5480 at 230.857 kb on + strand, within Pf1N1B4_5480 at 230.857 kb on + strand, within Pf1N1B4_5480 at 230.858 kb on - strand, within Pf1N1B4_5480 at 230.858 kb on - strand, within Pf1N1B4_5480 at 230.858 kb on - strand, within Pf1N1B4_5480 at 231.000 kb on + strand at 231.039 kb on + strand at 231.229 kb on + strand at 231.230 kb on - strand at 231.230 kb on - strand at 231.230 kb on - strand at 231.230 kb on - strand at 231.230 kb on - strand at 231.230 kb on - strand at 231.246 kb on + strand at 231.247 kb on - strand at 231.247 kb on - strand at 231.247 kb on - strand at 231.282 kb on - strand at 231.305 kb on - strand at 231.305 kb on - strand at 231.331 kb on + strand at 231.331 kb on + strand at 231.331 kb on + strand at 231.331 kb on + strand at 231.331 kb on + strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.332 kb on - strand at 231.351 kb on + strand at 231.351 kb on + strand at 231.351 kb on + strand at 231.352 kb on - strand at 231.352 kb on - strand at 231.352 kb on - strand at 231.412 kb on - strand at 231.518 kb on + strand at 231.519 kb on - strand at 231.519 kb on - strand at 231.543 kb on + strand at 231.544 kb on - strand at 231.568 kb on - strand at 231.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 229,944 - +0.2 229,948 - -0.1 229,968 - +1.2 230,049 - -0.4 230,056 - +1.8 230,151 + -2.4 230,151 + +1.5 230,152 - +1.2 230,255 + +0.2 230,273 + +0.2 230,274 - -0.8 230,348 + -1.4 230,348 + -0.8 230,348 + +1.2 230,349 - -0.4 230,549 + Pf1N1B4_5479 0.41 +0.9 230,550 - Pf1N1B4_5479 0.42 +1.6 230,550 - Pf1N1B4_5479 0.42 +0.8 230,550 - Pf1N1B4_5479 0.42 +1.8 230,553 + Pf1N1B4_5479 0.42 +2.8 230,554 - Pf1N1B4_5479 0.43 -1.1 230,554 - +1.2 230,554 - Pf1N1B4_5479 0.43 +0.2 230,577 + Pf1N1B4_5479 0.49 -0.1 230,577 + Pf1N1B4_5479 0.49 +0.9 230,577 + Pf1N1B4_5479 0.49 +1.2 230,577 + Pf1N1B4_5479 0.49 -2.1 230,577 + Pf1N1B4_5479 0.49 +0.2 230,578 - Pf1N1B4_5479 0.49 +0.5 230,578 - Pf1N1B4_5479 0.49 +2.0 230,578 - Pf1N1B4_5479 0.49 +0.8 230,578 - Pf1N1B4_5479 0.49 +1.2 230,578 - Pf1N1B4_5479 0.49 +0.2 230,578 - Pf1N1B4_5479 0.49 +1.5 230,578 - Pf1N1B4_5479 0.49 +1.2 230,643 + Pf1N1B4_5479 0.68 +0.2 230,697 - Pf1N1B4_5479 0.82 -0.8 230,697 - Pf1N1B4_5479 0.82 +0.2 230,697 - Pf1N1B4_5479 0.82 +1.8 230,697 - Pf1N1B4_5479 0.82 +0.2 230,759 + -0.8 230,759 + +1.8 230,760 - +0.2 230,857 + Pf1N1B4_5480 0.40 +1.6 230,857 + Pf1N1B4_5480 0.40 +1.2 230,857 + Pf1N1B4_5480 0.40 +1.1 230,857 + Pf1N1B4_5480 0.40 +0.2 230,857 + Pf1N1B4_5480 0.40 -0.1 230,858 - Pf1N1B4_5480 0.40 +1.8 230,858 - Pf1N1B4_5480 0.40 +2.0 230,858 - Pf1N1B4_5480 0.40 +1.2 231,000 + +0.6 231,039 + -0.4 231,229 + +0.2 231,230 - +0.2 231,230 - -0.5 231,230 - +0.2 231,230 - -0.7 231,230 - +0.1 231,230 - -0.8 231,246 + +2.8 231,247 - +0.2 231,247 - +1.4 231,247 - +0.4 231,282 - +2.2 231,305 - -0.8 231,305 - +1.2 231,331 + +0.9 231,331 + -0.4 231,331 + -0.8 231,331 + +1.8 231,331 + +0.2 231,332 - +1.5 231,332 - -0.8 231,332 - +1.2 231,332 - -0.8 231,332 - +0.7 231,332 - +0.2 231,332 - +1.2 231,332 - -0.4 231,332 - +2.2 231,332 - +1.6 231,332 - +1.8 231,332 - -1.6 231,351 + +0.8 231,351 + -0.2 231,351 + +1.2 231,352 - +0.8 231,352 - -0.8 231,352 - +2.2 231,412 - +0.2 231,518 + +0.2 231,519 - +1.8 231,519 - -1.4 231,543 + -0.2 231,544 - +1.5 231,568 - +1.2 231,663 + +1.2
Or see this region's nucleotide sequence