Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_503 and Pf1N1B4_504 are separated by 26 nucleotides Pf1N1B4_504 and Pf1N1B4_505 are separated by 465 nucleotides Pf1N1B4_505 and Pf1N1B4_506 are separated by 40 nucleotides Pf1N1B4_506 and Pf1N1B4_5170 are separated by 235 nucleotides Pf1N1B4_5170 and Pf1N1B4_5171 are separated by 6 nucleotides Pf1N1B4_5171 and Pf1N1B4_5172 are separated by 107 nucleotides Pf1N1B4_5172 and Pf1N1B4_5173 are separated by 5 nucleotides
Pf1N1B4_503 - Type IV prepilin peptidase TadV/CpaA, at 595,527 to 596,057
_503
Pf1N1B4_504 - Flp pilus assembly protein, pilin Flp, at 596,084 to 596,275
_504
Pf1N1B4_505 - hypothetical protein, at 596,741 to 596,926
_505
Pf1N1B4_506 - Transcriptional regulator, AraC family, at 596,967 to 597,551
_506
Pf1N1B4_5170 - tRNA-Gly-GCC, at 597,787 to 597,859
_5170
Pf1N1B4_5171 - tRNA-Glu-TTC, at 597,866 to 597,938
_5171
Pf1N1B4_5172 - tRNA-Gly-GCC, at 598,046 to 598,118
_5172
Pf1N1B4_5173 - tRNA-Glu-TTC, at 598,124 to 598,195
_5173
Position (kb) 596
597
598 Strain fitness (log2 ratio) -2
-1
0
1
2 at 596.034 kb on - strand at 596.071 kb on - strand at 596.071 kb on - strand at 596.071 kb on - strand at 596.074 kb on - strand at 596.074 kb on - strand at 596.082 kb on + strand at 596.082 kb on + strand at 596.083 kb on - strand at 596.083 kb on - strand at 596.085 kb on + strand at 596.086 kb on - strand at 596.092 kb on + strand at 596.092 kb on + strand at 596.093 kb on - strand at 596.202 kb on + strand, within Pf1N1B4_504 at 596.258 kb on - strand at 596.258 kb on - strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.345 kb on - strand at 596.389 kb on + strand at 596.389 kb on + strand at 596.390 kb on - strand at 596.417 kb on - strand at 596.551 kb on - strand at 596.641 kb on + strand at 596.641 kb on + strand at 596.641 kb on + strand at 596.641 kb on + strand at 596.641 kb on + strand at 596.642 kb on - strand at 596.642 kb on - strand at 596.644 kb on + strand at 596.644 kb on + strand at 596.645 kb on - strand at 596.678 kb on + strand at 596.678 kb on + strand at 596.988 kb on + strand at 596.988 kb on + strand at 596.988 kb on + strand at 596.989 kb on - strand at 596.989 kb on - strand at 596.989 kb on - strand at 597.180 kb on + strand, within Pf1N1B4_506 at 597.180 kb on + strand, within Pf1N1B4_506 at 597.180 kb on + strand, within Pf1N1B4_506 at 597.180 kb on + strand, within Pf1N1B4_506 at 597.180 kb on + strand, within Pf1N1B4_506 at 597.181 kb on - strand, within Pf1N1B4_506 at 597.181 kb on - strand, within Pf1N1B4_506 at 597.300 kb on + strand, within Pf1N1B4_506 at 597.300 kb on + strand, within Pf1N1B4_506 at 597.300 kb on + strand, within Pf1N1B4_506 at 597.300 kb on + strand, within Pf1N1B4_506 at 597.300 kb on + strand at 597.300 kb on + strand, within Pf1N1B4_506 at 597.301 kb on - strand at 597.301 kb on - strand, within Pf1N1B4_506 at 597.347 kb on + strand, within Pf1N1B4_506 at 597.359 kb on + strand, within Pf1N1B4_506 at 597.359 kb on + strand, within Pf1N1B4_506 at 597.359 kb on + strand, within Pf1N1B4_506 at 597.359 kb on + strand, within Pf1N1B4_506 at 597.359 kb on + strand, within Pf1N1B4_506 at 597.360 kb on - strand, within Pf1N1B4_506 at 597.360 kb on - strand, within Pf1N1B4_506 at 597.362 kb on + strand, within Pf1N1B4_506 at 597.362 kb on + strand, within Pf1N1B4_506 at 597.402 kb on + strand, within Pf1N1B4_506 at 597.402 kb on + strand, within Pf1N1B4_506 at 597.403 kb on - strand, within Pf1N1B4_506 at 597.451 kb on - strand, within Pf1N1B4_506 at 597.503 kb on + strand at 597.557 kb on + strand at 597.557 kb on + strand at 597.557 kb on + strand at 597.557 kb on + strand at 597.557 kb on + strand at 597.557 kb on + strand at 597.557 kb on + strand at 597.558 kb on - strand at 597.560 kb on + strand at 597.560 kb on + strand at 597.568 kb on - strand at 597.682 kb on + strand at 597.711 kb on - strand at 597.735 kb on + strand at 597.995 kb on - strand at 598.202 kb on - strand at 598.202 kb on - strand at 598.298 kb on - strand at 598.374 kb on + strand at 598.374 kb on + strand at 598.374 kb on + strand at 598.374 kb on + strand at 598.376 kb on + strand at 598.376 kb on + strand at 598.399 kb on + strand at 598.401 kb on + strand at 598.401 kb on + strand at 598.401 kb on + strand at 598.402 kb on - strand at 598.402 kb on - strand at 598.402 kb on - strand at 598.440 kb on + strand at 598.441 kb on - strand at 598.441 kb on - strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.444 kb on + strand at 598.445 kb on - strand at 598.445 kb on - strand at 598.445 kb on - strand at 598.445 kb on - strand at 598.445 kb on - strand at 598.445 kb on - strand at 598.445 kb on - strand at 598.448 kb on + strand at 598.448 kb on + strand at 598.448 kb on + strand at 598.448 kb on + strand at 598.448 kb on + strand at 598.448 kb on + strand at 598.448 kb on + strand at 598.449 kb on - strand at 598.449 kb on - strand at 598.449 kb on - strand at 598.449 kb on - strand at 598.452 kb on + strand at 598.452 kb on + strand at 598.452 kb on + strand at 598.452 kb on + strand at 598.453 kb on - strand at 598.453 kb on - strand at 598.453 kb on - strand at 598.472 kb on - strand at 598.472 kb on - strand at 598.473 kb on + strand at 598.473 kb on + strand at 598.473 kb on + strand at 598.473 kb on + strand at 598.473 kb on + strand at 598.473 kb on + strand at 598.473 kb on + strand at 598.474 kb on - strand at 598.474 kb on - strand at 598.532 kb on + strand at 598.532 kb on + strand at 598.532 kb on + strand at 598.532 kb on + strand at 598.532 kb on + strand at 598.533 kb on - strand at 598.533 kb on - strand at 598.533 kb on - strand at 598.533 kb on - strand at 598.535 kb on + strand at 598.536 kb on - strand at 598.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 596,034 - -0.6 596,071 - +1.5 596,071 - +0.9 596,071 - -2.1 596,074 - +1.5 596,074 - -1.1 596,082 + -0.1 596,082 + +1.3 596,083 - -0.5 596,083 - +1.5 596,085 + +0.5 596,086 - -0.1 596,092 + -0.1 596,092 + +0.9 596,093 - -1.1 596,202 + Pf1N1B4_504 0.61 -0.4 596,258 - +0.6 596,258 - +1.9 596,344 + -1.6 596,344 + -0.1 596,344 + -0.1 596,345 - -1.1 596,389 + -1.6 596,389 + -0.1 596,390 - +1.3 596,417 - -0.6 596,551 - +0.4 596,641 + +0.9 596,641 + +0.9 596,641 + -0.1 596,641 + +0.4 596,641 + -0.1 596,642 - -0.1 596,642 - -1.1 596,644 + -1.6 596,644 + -1.1 596,645 - +0.3 596,678 + -0.6 596,678 + -2.1 596,988 + -1.1 596,988 + +0.9 596,988 + +1.3 596,989 - -0.3 596,989 - -0.1 596,989 - +0.7 597,180 + Pf1N1B4_506 0.36 +0.9 597,180 + Pf1N1B4_506 0.36 +1.9 597,180 + Pf1N1B4_506 0.36 -0.1 597,180 + Pf1N1B4_506 0.36 -0.6 597,180 + Pf1N1B4_506 0.36 +1.5 597,181 - Pf1N1B4_506 0.37 -0.1 597,181 - Pf1N1B4_506 0.37 -0.1 597,300 + Pf1N1B4_506 0.57 +1.9 597,300 + Pf1N1B4_506 0.57 -0.5 597,300 + Pf1N1B4_506 0.57 +1.2 597,300 + Pf1N1B4_506 0.57 +2.3 597,300 + -0.1 597,300 + Pf1N1B4_506 0.57 +2.3 597,301 - -0.1 597,301 - Pf1N1B4_506 0.57 +1.5 597,347 + Pf1N1B4_506 0.65 +0.8 597,359 + Pf1N1B4_506 0.67 +1.6 597,359 + Pf1N1B4_506 0.67 -0.9 597,359 + Pf1N1B4_506 0.67 +1.5 597,359 + Pf1N1B4_506 0.67 +2.3 597,359 + Pf1N1B4_506 0.67 -0.1 597,360 - Pf1N1B4_506 0.67 +0.4 597,360 - Pf1N1B4_506 0.67 +0.9 597,362 + Pf1N1B4_506 0.68 +0.5 597,362 + Pf1N1B4_506 0.68 +2.3 597,402 + Pf1N1B4_506 0.74 -2.1 597,402 + Pf1N1B4_506 0.74 +0.9 597,403 - Pf1N1B4_506 0.75 +0.8 597,451 - Pf1N1B4_506 0.83 -0.1 597,503 + +0.1 597,557 + -1.9 597,557 + -0.7 597,557 + +1.5 597,557 + -0.4 597,557 + +1.5 597,557 + -0.6 597,557 + +1.2 597,558 - +0.9 597,560 + -0.1 597,560 + -1.1 597,568 - -0.4 597,682 + +0.9 597,711 - +0.4 597,735 + +0.5 597,995 - +1.5 598,202 - -0.1 598,202 - +0.9 598,298 - +0.9 598,374 + +1.3 598,374 + -1.6 598,374 + +0.2 598,374 + +0.5 598,376 + -0.6 598,376 + +1.5 598,399 + -0.1 598,401 + +2.3 598,401 + -1.1 598,401 + -1.6 598,402 - -0.9 598,402 - -0.1 598,402 - -0.6 598,440 + -0.1 598,441 - +0.5 598,441 - -0.4 598,444 + +2.5 598,444 + +0.5 598,444 + -0.1 598,444 + -1.1 598,444 + -0.6 598,444 + -1.6 598,444 + -1.6 598,444 + +1.9 598,444 + +0.1 598,445 - +1.2 598,445 - +2.3 598,445 - -0.6 598,445 - -0.1 598,445 - -1.1 598,445 - +1.8 598,445 - -0.1 598,448 + -0.8 598,448 + +1.9 598,448 + -0.1 598,448 + +1.2 598,448 + +0.2 598,448 + +0.5 598,448 + +0.9 598,449 - +0.5 598,449 - -0.6 598,449 - +0.9 598,449 - +0.2 598,452 + +1.5 598,452 + -0.1 598,452 + -1.1 598,452 + +0.9 598,453 - +0.9 598,453 - -0.1 598,453 - +1.5 598,472 - +0.9 598,472 - +0.9 598,473 + -2.4 598,473 + -1.1 598,473 + -0.1 598,473 + -0.6 598,473 + +0.9 598,473 + -1.6 598,473 + -0.1 598,474 - -1.1 598,474 - -0.1 598,532 + +0.5 598,532 + -1.1 598,532 + -1.1 598,532 + +0.9 598,532 + -1.1 598,533 - -0.1 598,533 - +0.5 598,533 - +0.2 598,533 - +0.9 598,535 + +0.7 598,536 - +0.9 598,536 - -0.4
Or see this region's nucleotide sequence