Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4913

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4911 and Pf1N1B4_4912 are separated by 45 nucleotidesPf1N1B4_4912 and Pf1N1B4_4913 are separated by 448 nucleotidesPf1N1B4_4913 and Pf1N1B4_4914 are separated by 39 nucleotides Pf1N1B4_4911 - FIG00953249: hypothetical protein, at 5,441,448 to 5,442,104 _4911 Pf1N1B4_4912 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 5,442,150 to 5,442,638 _4912 Pf1N1B4_4913 - hypothetical protein, at 5,443,087 to 5,443,866 _4913 Pf1N1B4_4914 - Membrane protein, putative, at 5,443,906 to 5,445,111 _4914 Position (kb) 5443 5444Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5442.125 kb on - strandat 5442.125 kb on - strandat 5442.161 kb on - strandat 5442.164 kb on - strandat 5442.303 kb on + strand, within Pf1N1B4_4912at 5442.306 kb on - strand, within Pf1N1B4_4912at 5442.316 kb on - strandat 5442.362 kb on - strand, within Pf1N1B4_4912at 5442.443 kb on - strand, within Pf1N1B4_4912at 5442.565 kb on - strand, within Pf1N1B4_4912at 5442.963 kb on + strandat 5443.008 kb on + strandat 5443.009 kb on - strandat 5443.009 kb on - strandat 5443.009 kb on - strandat 5443.205 kb on - strand, within Pf1N1B4_4913at 5443.419 kb on + strand, within Pf1N1B4_4913at 5443.552 kb on + strand, within Pf1N1B4_4913at 5443.673 kb on - strand, within Pf1N1B4_4913at 5443.673 kb on - strand, within Pf1N1B4_4913at 5443.673 kb on - strand, within Pf1N1B4_4913at 5443.673 kb on - strand, within Pf1N1B4_4913at 5443.673 kb on - strand, within Pf1N1B4_4913at 5443.673 kb on - strandat 5443.673 kb on - strand, within Pf1N1B4_4913at 5443.905 kb on + strandat 5443.914 kb on - strandat 5443.963 kb on - strandat 5444.119 kb on + strand, within Pf1N1B4_4914at 5444.120 kb on - strand, within Pf1N1B4_4914at 5444.120 kb on - strand, within Pf1N1B4_4914at 5444.120 kb on - strand, within Pf1N1B4_4914at 5444.191 kb on + strand, within Pf1N1B4_4914at 5444.191 kb on + strand, within Pf1N1B4_4914at 5444.770 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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5,442,125 - +0.5
5,442,125 - +0.5
5,442,161 - -2.8
5,442,164 - -0.5
5,442,303 + Pf1N1B4_4912 0.31 -1.3
5,442,306 - Pf1N1B4_4912 0.32 +0.1
5,442,316 - +0.5
5,442,362 - Pf1N1B4_4912 0.43 +0.7
5,442,443 - Pf1N1B4_4912 0.60 -1.1
5,442,565 - Pf1N1B4_4912 0.85 -1.8
5,442,963 + -0.1
5,443,008 + +0.6
5,443,009 - -0.5
5,443,009 - -2.1
5,443,009 - -0.5
5,443,205 - Pf1N1B4_4913 0.15 +1.1
5,443,419 + Pf1N1B4_4913 0.43 +1.1
5,443,552 + Pf1N1B4_4913 0.60 +0.1
5,443,673 - Pf1N1B4_4913 0.75 +0.1
5,443,673 - Pf1N1B4_4913 0.75 +1.5
5,443,673 - Pf1N1B4_4913 0.75 +0.2
5,443,673 - Pf1N1B4_4913 0.75 +1.3
5,443,673 - Pf1N1B4_4913 0.75 +1.5
5,443,673 - +0.5
5,443,673 - Pf1N1B4_4913 0.75 +2.1
5,443,905 + +0.5
5,443,914 - +1.5
5,443,963 - +0.5
5,444,119 + Pf1N1B4_4914 0.18 +1.8
5,444,120 - Pf1N1B4_4914 0.18 +0.8
5,444,120 - Pf1N1B4_4914 0.18 +1.0
5,444,120 - Pf1N1B4_4914 0.18 -2.1
5,444,191 + Pf1N1B4_4914 0.24 -0.0
5,444,191 + Pf1N1B4_4914 0.24 -0.5
5,444,770 + +0.5

Or see this region's nucleotide sequence