Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4770

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4768 and Pf1N1B4_4769 are separated by 253 nucleotidesPf1N1B4_4769 and Pf1N1B4_4770 are separated by 118 nucleotidesPf1N1B4_4770 and Pf1N1B4_4771 are separated by 101 nucleotidesPf1N1B4_4771 and Pf1N1B4_4772 are separated by 190 nucleotides Pf1N1B4_4768 - hypothetical protein, at 5,264,824 to 5,267,631 _4768 Pf1N1B4_4769 - hypothetical protein, at 5,267,885 to 5,268,076 _4769 Pf1N1B4_4770 - Putative autotransporter, at 5,268,195 to 5,270,408 _4770 Pf1N1B4_4771 - Probable transmembrane protein, at 5,270,510 to 5,271,151 _4771 Pf1N1B4_4772 - RND efflux system, inner membrane transporter CmeB, at 5,271,342 to 5,274,440 _4772 Position (kb) 5268 5269 5270 5271Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5267.257 kb on + strand, within Pf1N1B4_4768at 5267.274 kb on + strand, within Pf1N1B4_4768at 5267.288 kb on + strand, within Pf1N1B4_4768at 5267.362 kb on - strandat 5267.413 kb on + strandat 5267.413 kb on + strandat 5267.413 kb on + strandat 5267.418 kb on + strandat 5267.418 kb on + strandat 5267.453 kb on + strandat 5267.453 kb on + strandat 5267.515 kb on + strandat 5267.523 kb on + strandat 5267.523 kb on + strandat 5267.523 kb on + strandat 5267.634 kb on - strandat 5267.795 kb on - strandat 5267.850 kb on + strandat 5267.959 kb on - strand, within Pf1N1B4_4769at 5268.275 kb on + strandat 5268.275 kb on + strandat 5268.276 kb on - strandat 5268.276 kb on - strandat 5268.508 kb on + strand, within Pf1N1B4_4770at 5268.710 kb on + strand, within Pf1N1B4_4770at 5268.711 kb on - strand, within Pf1N1B4_4770at 5268.711 kb on - strand, within Pf1N1B4_4770at 5268.828 kb on - strandat 5268.831 kb on - strand, within Pf1N1B4_4770at 5268.831 kb on - strand, within Pf1N1B4_4770at 5268.843 kb on - strand, within Pf1N1B4_4770at 5268.847 kb on + strand, within Pf1N1B4_4770at 5268.847 kb on + strand, within Pf1N1B4_4770at 5268.847 kb on + strand, within Pf1N1B4_4770at 5268.848 kb on - strand, within Pf1N1B4_4770at 5268.848 kb on - strand, within Pf1N1B4_4770at 5268.848 kb on - strand, within Pf1N1B4_4770at 5268.848 kb on - strand, within Pf1N1B4_4770at 5269.184 kb on + strand, within Pf1N1B4_4770at 5269.185 kb on - strand, within Pf1N1B4_4770at 5269.383 kb on - strand, within Pf1N1B4_4770at 5269.422 kb on + strand, within Pf1N1B4_4770at 5269.642 kb on - strand, within Pf1N1B4_4770at 5269.947 kb on + strand, within Pf1N1B4_4770at 5269.947 kb on + strand, within Pf1N1B4_4770at 5269.947 kb on + strand, within Pf1N1B4_4770at 5269.947 kb on + strand, within Pf1N1B4_4770at 5269.948 kb on - strand, within Pf1N1B4_4770at 5269.991 kb on + strand, within Pf1N1B4_4770at 5270.010 kb on + strand, within Pf1N1B4_4770at 5270.010 kb on + strand, within Pf1N1B4_4770at 5270.029 kb on + strand, within Pf1N1B4_4770at 5270.029 kb on + strandat 5270.029 kb on + strand, within Pf1N1B4_4770at 5270.029 kb on + strand, within Pf1N1B4_4770at 5270.029 kb on + strand, within Pf1N1B4_4770at 5270.035 kb on + strand, within Pf1N1B4_4770at 5270.267 kb on + strandat 5270.315 kb on + strandat 5270.315 kb on + strandat 5270.315 kb on + strandat 5270.386 kb on + strandat 5270.386 kb on + strandat 5270.386 kb on + strandat 5270.386 kb on + strandat 5270.397 kb on + strandat 5270.398 kb on - strandat 5270.561 kb on - strandat 5270.561 kb on - strandat 5270.561 kb on - strandat 5270.561 kb on - strandat 5270.561 kb on - strandat 5270.745 kb on + strand, within Pf1N1B4_4771at 5270.745 kb on + strandat 5270.746 kb on - strand, within Pf1N1B4_4771at 5270.748 kb on + strand, within Pf1N1B4_4771at 5270.748 kb on + strandat 5270.749 kb on - strand, within Pf1N1B4_4771at 5270.749 kb on - strandat 5270.760 kb on + strand, within Pf1N1B4_4771at 5270.761 kb on - strand, within Pf1N1B4_4771at 5270.927 kb on + strandat 5270.927 kb on + strandat 5270.927 kb on + strand, within Pf1N1B4_4771at 5271.177 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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5,267,257 + Pf1N1B4_4768 0.87 +0.4
5,267,274 + Pf1N1B4_4768 0.87 -0.6
5,267,288 + Pf1N1B4_4768 0.88 +2.2
5,267,362 - -0.2
5,267,413 + -1.0
5,267,413 + +0.8
5,267,413 + -1.1
5,267,418 + -0.6
5,267,418 + +0.2
5,267,453 + +0.0
5,267,453 + +1.0
5,267,515 + +0.4
5,267,523 + +1.4
5,267,523 + -0.6
5,267,523 + -0.6
5,267,634 - +0.0
5,267,795 - +0.4
5,267,850 + -0.6
5,267,959 - Pf1N1B4_4769 0.39 -0.6
5,268,275 + +1.0
5,268,275 + -1.6
5,268,276 - -2.1
5,268,276 - -0.6
5,268,508 + Pf1N1B4_4770 0.14 -3.7
5,268,710 + Pf1N1B4_4770 0.23 +0.0
5,268,711 - Pf1N1B4_4770 0.23 -1.6
5,268,711 - Pf1N1B4_4770 0.23 +0.4
5,268,828 - -1.6
5,268,831 - Pf1N1B4_4770 0.29 -0.2
5,268,831 - Pf1N1B4_4770 0.29 +0.8
5,268,843 - Pf1N1B4_4770 0.29 +0.4
5,268,847 + Pf1N1B4_4770 0.29 +1.0
5,268,847 + Pf1N1B4_4770 0.29 -1.0
5,268,847 + Pf1N1B4_4770 0.29 -0.6
5,268,848 - Pf1N1B4_4770 0.29 -0.1
5,268,848 - Pf1N1B4_4770 0.29 -0.6
5,268,848 - Pf1N1B4_4770 0.29 -0.6
5,268,848 - Pf1N1B4_4770 0.29 +0.4
5,269,184 + Pf1N1B4_4770 0.45 -1.6
5,269,185 - Pf1N1B4_4770 0.45 -0.8
5,269,383 - Pf1N1B4_4770 0.54 -1.6
5,269,422 + Pf1N1B4_4770 0.55 -1.6
5,269,642 - Pf1N1B4_4770 0.65 +0.4
5,269,947 + Pf1N1B4_4770 0.79 +0.0
5,269,947 + Pf1N1B4_4770 0.79 -1.3
5,269,947 + Pf1N1B4_4770 0.79 -0.6
5,269,947 + Pf1N1B4_4770 0.79 +1.2
5,269,948 - Pf1N1B4_4770 0.79 +0.4
5,269,991 + Pf1N1B4_4770 0.81 -0.6
5,270,010 + Pf1N1B4_4770 0.82 +1.0
5,270,010 + Pf1N1B4_4770 0.82 +1.8
5,270,029 + Pf1N1B4_4770 0.83 -0.6
5,270,029 + -0.6
5,270,029 + Pf1N1B4_4770 0.83 +0.8
5,270,029 + Pf1N1B4_4770 0.83 +1.4
5,270,029 + Pf1N1B4_4770 0.83 -0.6
5,270,035 + Pf1N1B4_4770 0.83 -0.6
5,270,267 + +0.4
5,270,315 + +0.4
5,270,315 + +0.0
5,270,315 + -0.6
5,270,386 + -0.8
5,270,386 + +2.2
5,270,386 + -0.2
5,270,386 + +0.4
5,270,397 + -0.2
5,270,398 - +1.3
5,270,561 - -0.6
5,270,561 - -0.6
5,270,561 - +0.9
5,270,561 - +1.0
5,270,561 - +0.8
5,270,745 + Pf1N1B4_4771 0.37 +0.4
5,270,745 + -0.6
5,270,746 - Pf1N1B4_4771 0.37 -1.6
5,270,748 + Pf1N1B4_4771 0.37 -1.6
5,270,748 + +0.4
5,270,749 - Pf1N1B4_4771 0.37 -0.6
5,270,749 - -0.6
5,270,760 + Pf1N1B4_4771 0.39 -0.6
5,270,761 - Pf1N1B4_4771 0.39 +0.4
5,270,927 + -1.6
5,270,927 + +1.0
5,270,927 + Pf1N1B4_4771 0.65 -0.0
5,271,177 - +0.8

Or see this region's nucleotide sequence