Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4458

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4456 and Pf1N1B4_4457 overlap by 14 nucleotidesPf1N1B4_4457 and Pf1N1B4_4458 overlap by 4 nucleotidesPf1N1B4_4458 and Pf1N1B4_4459 overlap by 11 nucleotidesPf1N1B4_4459 and Pf1N1B4_4460 are separated by 187 nucleotides Pf1N1B4_4456 - Short-chain dehydrogenase/reductase SDR, at 4,916,582 to 4,917,391 _4456 Pf1N1B4_4457 - long-chain acyl-CoA synthetase, at 4,917,378 to 4,918,052 _4457 Pf1N1B4_4458 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 4,918,049 to 4,919,530 _4458 Pf1N1B4_4459 - Thermostable hemolysin delta-VPH, at 4,919,520 to 4,920,197 _4459 Pf1N1B4_4460 - Cytochrome b561, at 4,920,385 to 4,920,957 _4460 Position (kb) 4918 4919 4920Strain fitness (log2 ratio) -1 0 1 2at 4917.185 kb on + strandat 4917.436 kb on + strandat 4917.437 kb on - strandat 4917.446 kb on - strand, within Pf1N1B4_4457at 4917.562 kb on + strand, within Pf1N1B4_4457at 4917.563 kb on - strand, within Pf1N1B4_4457at 4917.812 kb on - strand, within Pf1N1B4_4457at 4917.826 kb on + strand, within Pf1N1B4_4457at 4917.826 kb on + strand, within Pf1N1B4_4457at 4917.827 kb on - strand, within Pf1N1B4_4457at 4917.919 kb on + strand, within Pf1N1B4_4457at 4917.920 kb on - strand, within Pf1N1B4_4457at 4917.920 kb on - strand, within Pf1N1B4_4457at 4918.429 kb on - strand, within Pf1N1B4_4458at 4918.662 kb on + strand, within Pf1N1B4_4458at 4918.662 kb on + strandat 4918.663 kb on - strand, within Pf1N1B4_4458at 4919.095 kb on + strand, within Pf1N1B4_4458at 4919.430 kb on + strandat 4919.430 kb on + strandat 4919.431 kb on - strandat 4919.648 kb on - strand, within Pf1N1B4_4459at 4919.797 kb on + strand, within Pf1N1B4_4459at 4919.797 kb on + strandat 4919.797 kb on + strandat 4919.798 kb on - strand, within Pf1N1B4_4459at 4920.235 kb on - strandat 4920.285 kb on - strandat 4920.384 kb on + strandat 4920.384 kb on + strandat 4920.385 kb on - strandat 4920.404 kb on + strandat 4920.404 kb on + strandat 4920.469 kb on + strand, within Pf1N1B4_4460

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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4,917,185 + +0.6
4,917,436 + -0.4
4,917,437 - -0.4
4,917,446 - Pf1N1B4_4457 0.10 +1.9
4,917,562 + Pf1N1B4_4457 0.27 +1.6
4,917,563 - Pf1N1B4_4457 0.27 +1.6
4,917,812 - Pf1N1B4_4457 0.64 +0.1
4,917,826 + Pf1N1B4_4457 0.66 +0.6
4,917,826 + Pf1N1B4_4457 0.66 +0.1
4,917,827 - Pf1N1B4_4457 0.67 +0.8
4,917,919 + Pf1N1B4_4457 0.80 -0.4
4,917,920 - Pf1N1B4_4457 0.80 -0.4
4,917,920 - Pf1N1B4_4457 0.80 -0.0
4,918,429 - Pf1N1B4_4458 0.26 +1.9
4,918,662 + Pf1N1B4_4458 0.41 +1.3
4,918,662 + +0.1
4,918,663 - Pf1N1B4_4458 0.41 +1.6
4,919,095 + Pf1N1B4_4458 0.71 +0.9
4,919,430 + +0.1
4,919,430 + -0.4
4,919,431 - +0.1
4,919,648 - Pf1N1B4_4459 0.19 +2.1
4,919,797 + Pf1N1B4_4459 0.41 +0.5
4,919,797 + -1.4
4,919,797 + -0.4
4,919,798 - Pf1N1B4_4459 0.41 +0.6
4,920,235 - +0.3
4,920,285 - +1.6
4,920,384 + -0.4
4,920,384 + -0.4
4,920,385 - -0.0
4,920,404 + -0.6
4,920,404 + +1.1
4,920,469 + Pf1N1B4_4460 0.15 -0.1

Or see this region's nucleotide sequence