Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4456 and Pf1N1B4_4457 overlap by 14 nucleotides Pf1N1B4_4457 and Pf1N1B4_4458 overlap by 4 nucleotides Pf1N1B4_4458 and Pf1N1B4_4459 overlap by 11 nucleotides Pf1N1B4_4459 and Pf1N1B4_4460 are separated by 187 nucleotides
Pf1N1B4_4456 - Short-chain dehydrogenase/reductase SDR, at 4,916,582 to 4,917,391
_4456
Pf1N1B4_4457 - long-chain acyl-CoA synthetase, at 4,917,378 to 4,918,052
_4457
Pf1N1B4_4458 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 4,918,049 to 4,919,530
_4458
Pf1N1B4_4459 - Thermostable hemolysin delta-VPH, at 4,919,520 to 4,920,197
_4459
Pf1N1B4_4460 - Cytochrome b561, at 4,920,385 to 4,920,957
_4460
Position (kb)
4918
4919
4920 Strain fitness (log2 ratio)
-1
0
1
2 at 4917.185 kb on + strand at 4917.436 kb on + strand at 4917.437 kb on - strand at 4917.446 kb on - strand, within Pf1N1B4_4457 at 4917.562 kb on + strand, within Pf1N1B4_4457 at 4917.563 kb on - strand, within Pf1N1B4_4457 at 4917.812 kb on - strand, within Pf1N1B4_4457 at 4917.826 kb on + strand, within Pf1N1B4_4457 at 4917.826 kb on + strand, within Pf1N1B4_4457 at 4917.827 kb on - strand, within Pf1N1B4_4457 at 4917.919 kb on + strand, within Pf1N1B4_4457 at 4917.920 kb on - strand, within Pf1N1B4_4457 at 4917.920 kb on - strand, within Pf1N1B4_4457 at 4918.429 kb on - strand, within Pf1N1B4_4458 at 4918.662 kb on + strand, within Pf1N1B4_4458 at 4918.662 kb on + strand at 4918.663 kb on - strand, within Pf1N1B4_4458 at 4919.095 kb on + strand, within Pf1N1B4_4458 at 4919.430 kb on + strand at 4919.430 kb on + strand at 4919.431 kb on - strand at 4919.648 kb on - strand, within Pf1N1B4_4459 at 4919.797 kb on + strand, within Pf1N1B4_4459 at 4919.797 kb on + strand at 4919.797 kb on + strand at 4919.798 kb on - strand, within Pf1N1B4_4459 at 4920.235 kb on - strand at 4920.285 kb on - strand at 4920.384 kb on + strand at 4920.384 kb on + strand at 4920.385 kb on - strand at 4920.404 kb on + strand at 4920.404 kb on + strand at 4920.469 kb on + strand, within Pf1N1B4_4460
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 4,917,185 + +0.6 4,917,436 + -0.4 4,917,437 - -0.4 4,917,446 - Pf1N1B4_4457 0.10 +1.9 4,917,562 + Pf1N1B4_4457 0.27 +1.6 4,917,563 - Pf1N1B4_4457 0.27 +1.6 4,917,812 - Pf1N1B4_4457 0.64 +0.1 4,917,826 + Pf1N1B4_4457 0.66 +0.6 4,917,826 + Pf1N1B4_4457 0.66 +0.1 4,917,827 - Pf1N1B4_4457 0.67 +0.8 4,917,919 + Pf1N1B4_4457 0.80 -0.4 4,917,920 - Pf1N1B4_4457 0.80 -0.4 4,917,920 - Pf1N1B4_4457 0.80 -0.0 4,918,429 - Pf1N1B4_4458 0.26 +1.9 4,918,662 + Pf1N1B4_4458 0.41 +1.3 4,918,662 + +0.1 4,918,663 - Pf1N1B4_4458 0.41 +1.6 4,919,095 + Pf1N1B4_4458 0.71 +0.9 4,919,430 + +0.1 4,919,430 + -0.4 4,919,431 - +0.1 4,919,648 - Pf1N1B4_4459 0.19 +2.1 4,919,797 + Pf1N1B4_4459 0.41 +0.5 4,919,797 + -1.4 4,919,797 + -0.4 4,919,798 - Pf1N1B4_4459 0.41 +0.6 4,920,235 - +0.3 4,920,285 - +1.6 4,920,384 + -0.4 4,920,384 + -0.4 4,920,385 - -0.0 4,920,404 + -0.6 4,920,404 + +1.1 4,920,469 + Pf1N1B4_4460 0.15 -0.1
Or see this region's nucleotide sequence