Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4239 and Pf1N1B4_4240 are separated by 137 nucleotides Pf1N1B4_4240 and Pf1N1B4_4241 are separated by 273 nucleotides Pf1N1B4_4241 and Pf1N1B4_4242 are separated by 225 nucleotides
Pf1N1B4_4239 - hypothetical protein, at 4,698,425 to 4,698,976
_4239
Pf1N1B4_4240 - hypothetical protein, at 4,699,114 to 4,699,263
_4240
Pf1N1B4_4241 - Dienelactone hydrolase family, at 4,699,537 to 4,700,424
_4241
Pf1N1B4_4242 - cell processes; transport of small molecules; amino acids, amines, peptides, at 4,700,650 to 4,702,215
_4242
Position (kb) 4699
4700
4701 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4698.726 kb on + strand, within Pf1N1B4_4239 at 4698.727 kb on - strand, within Pf1N1B4_4239 at 4698.732 kb on + strand at 4698.733 kb on - strand, within Pf1N1B4_4239 at 4698.733 kb on - strand, within Pf1N1B4_4239 at 4698.873 kb on + strand, within Pf1N1B4_4239 at 4698.873 kb on + strand, within Pf1N1B4_4239 at 4698.873 kb on + strand at 4698.874 kb on - strand, within Pf1N1B4_4239 at 4698.880 kb on - strand, within Pf1N1B4_4239 at 4699.076 kb on + strand at 4699.109 kb on - strand at 4699.115 kb on + strand at 4699.165 kb on - strand, within Pf1N1B4_4240 at 4699.168 kb on + strand, within Pf1N1B4_4240 at 4699.169 kb on - strand, within Pf1N1B4_4240 at 4699.281 kb on + strand at 4699.282 kb on - strand at 4699.520 kb on + strand at 4699.649 kb on + strand, within Pf1N1B4_4241 at 4699.653 kb on + strand, within Pf1N1B4_4241 at 4699.653 kb on + strand, within Pf1N1B4_4241 at 4699.653 kb on + strand, within Pf1N1B4_4241 at 4699.655 kb on + strand, within Pf1N1B4_4241 at 4699.655 kb on + strand at 4699.655 kb on + strand, within Pf1N1B4_4241 at 4699.655 kb on + strand, within Pf1N1B4_4241 at 4699.656 kb on - strand, within Pf1N1B4_4241 at 4699.664 kb on + strand, within Pf1N1B4_4241 at 4699.664 kb on + strand, within Pf1N1B4_4241 at 4699.664 kb on + strand, within Pf1N1B4_4241 at 4699.665 kb on - strand, within Pf1N1B4_4241 at 4699.665 kb on - strand, within Pf1N1B4_4241 at 4699.665 kb on - strand, within Pf1N1B4_4241 at 4699.799 kb on + strand, within Pf1N1B4_4241 at 4699.799 kb on + strand, within Pf1N1B4_4241 at 4699.819 kb on + strand, within Pf1N1B4_4241 at 4700.087 kb on + strand, within Pf1N1B4_4241 at 4700.088 kb on - strand, within Pf1N1B4_4241 at 4700.201 kb on + strand, within Pf1N1B4_4241 at 4700.210 kb on + strand, within Pf1N1B4_4241 at 4700.210 kb on + strand, within Pf1N1B4_4241 at 4700.210 kb on + strand, within Pf1N1B4_4241 at 4700.211 kb on - strand, within Pf1N1B4_4241 at 4700.261 kb on + strand, within Pf1N1B4_4241 at 4700.262 kb on - strand, within Pf1N1B4_4241 at 4700.262 kb on - strand, within Pf1N1B4_4241 at 4700.367 kb on - strand at 4700.369 kb on + strand at 4700.369 kb on + strand at 4700.370 kb on - strand at 4700.375 kb on + strand at 4700.487 kb on + strand at 4700.487 kb on + strand at 4700.488 kb on - strand at 4700.546 kb on + strand at 4700.601 kb on + strand at 4700.889 kb on - strand at 4700.889 kb on - strand, within Pf1N1B4_4242 at 4700.889 kb on - strand, within Pf1N1B4_4242 at 4700.943 kb on - strand, within Pf1N1B4_4242 at 4700.946 kb on + strand, within Pf1N1B4_4242 at 4700.947 kb on - strand, within Pf1N1B4_4242 at 4700.947 kb on - strand, within Pf1N1B4_4242 at 4701.021 kb on - strand, within Pf1N1B4_4242
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 4,698,726 + Pf1N1B4_4239 0.55 -0.3 4,698,727 - Pf1N1B4_4239 0.55 +0.6 4,698,732 + -0.4 4,698,733 - Pf1N1B4_4239 0.56 +0.2 4,698,733 - Pf1N1B4_4239 0.56 -0.4 4,698,873 + Pf1N1B4_4239 0.81 +2.2 4,698,873 + Pf1N1B4_4239 0.81 -1.4 4,698,873 + +0.6 4,698,874 - Pf1N1B4_4239 0.81 +0.6 4,698,880 - Pf1N1B4_4239 0.82 +1.2 4,699,076 + -0.3 4,699,109 - +1.2 4,699,115 + +0.6 4,699,165 - Pf1N1B4_4240 0.34 +0.2 4,699,168 + Pf1N1B4_4240 0.36 +1.9 4,699,169 - Pf1N1B4_4240 0.37 +1.0 4,699,281 + +0.3 4,699,282 - -1.4 4,699,520 + +0.6 4,699,649 + Pf1N1B4_4241 0.13 +0.6 4,699,653 + Pf1N1B4_4241 0.13 +1.2 4,699,653 + Pf1N1B4_4241 0.13 +2.2 4,699,653 + Pf1N1B4_4241 0.13 -1.0 4,699,655 + Pf1N1B4_4241 0.13 +0.6 4,699,655 + -0.4 4,699,655 + Pf1N1B4_4241 0.13 -1.0 4,699,655 + Pf1N1B4_4241 0.13 +1.4 4,699,656 - Pf1N1B4_4241 0.13 +0.3 4,699,664 + Pf1N1B4_4241 0.14 -0.4 4,699,664 + Pf1N1B4_4241 0.14 +2.2 4,699,664 + Pf1N1B4_4241 0.14 +0.2 4,699,665 - Pf1N1B4_4241 0.14 +1.4 4,699,665 - Pf1N1B4_4241 0.14 +0.9 4,699,665 - Pf1N1B4_4241 0.14 +0.6 4,699,799 + Pf1N1B4_4241 0.30 +0.6 4,699,799 + Pf1N1B4_4241 0.30 +0.6 4,699,819 + Pf1N1B4_4241 0.32 +1.6 4,700,087 + Pf1N1B4_4241 0.62 -0.4 4,700,088 - Pf1N1B4_4241 0.62 +1.4 4,700,201 + Pf1N1B4_4241 0.75 +1.9 4,700,210 + Pf1N1B4_4241 0.76 +0.6 4,700,210 + Pf1N1B4_4241 0.76 +1.2 4,700,210 + Pf1N1B4_4241 0.76 -0.0 4,700,211 - Pf1N1B4_4241 0.76 -1.0 4,700,261 + Pf1N1B4_4241 0.82 +0.6 4,700,262 - Pf1N1B4_4241 0.82 +0.6 4,700,262 - Pf1N1B4_4241 0.82 +0.9 4,700,367 - +0.9 4,700,369 + -0.4 4,700,369 + -1.0 4,700,370 - -1.4 4,700,375 + +0.9 4,700,487 + -0.4 4,700,487 + +0.6 4,700,488 - +0.2 4,700,546 + +1.2 4,700,601 + -0.4 4,700,889 - +0.6 4,700,889 - Pf1N1B4_4242 0.15 +0.9 4,700,889 - Pf1N1B4_4242 0.15 -1.2 4,700,943 - Pf1N1B4_4242 0.19 +0.6 4,700,946 + Pf1N1B4_4242 0.19 -0.4 4,700,947 - Pf1N1B4_4242 0.19 +0.2 4,700,947 - Pf1N1B4_4242 0.19 -1.4 4,701,021 - Pf1N1B4_4242 0.24 -2.0
Or see this region's nucleotide sequence