Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3904 and Pf1N1B4_3905 are separated by 98 nucleotides Pf1N1B4_3905 and Pf1N1B4_3906 are separated by 114 nucleotides
Pf1N1B4_3904 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 4,335,300 to 4,336,451
_3904
Pf1N1B4_3905 - FIG00953423: hypothetical protein, at 4,336,550 to 4,336,786
_3905
Pf1N1B4_3906 - DNA topoisomerase I (EC 5.99.1.2), at 4,336,901 to 4,339,528
_3906
Position (kb)
4336
4337 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4336.519 kb on - strand at 4336.581 kb on - strand, within Pf1N1B4_3905 at 4336.581 kb on - strand, within Pf1N1B4_3905 at 4336.581 kb on - strand, within Pf1N1B4_3905 at 4336.581 kb on - strand, within Pf1N1B4_3905 at 4336.581 kb on - strand, within Pf1N1B4_3905 at 4336.603 kb on - strand, within Pf1N1B4_3905 at 4336.603 kb on - strand, within Pf1N1B4_3905 at 4336.603 kb on - strand, within Pf1N1B4_3905 at 4336.649 kb on + strand, within Pf1N1B4_3905 at 4336.650 kb on - strand, within Pf1N1B4_3905 at 4336.650 kb on - strand at 4336.650 kb on - strand, within Pf1N1B4_3905 at 4336.835 kb on + strand at 4336.835 kb on + strand at 4336.835 kb on + strand at 4336.835 kb on + strand at 4336.837 kb on + strand at 4336.837 kb on + strand at 4336.837 kb on + strand at 4336.837 kb on + strand at 4336.837 kb on + strand at 4336.837 kb on + strand at 4336.837 kb on + strand at 4336.839 kb on + strand at 4336.877 kb on + strand at 4336.877 kb on + strand at 4336.877 kb on + strand at 4336.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 4,336,519 - +1.3 4,336,581 - Pf1N1B4_3905 0.13 -0.9 4,336,581 - Pf1N1B4_3905 0.13 +1.7 4,336,581 - Pf1N1B4_3905 0.13 -0.7 4,336,581 - Pf1N1B4_3905 0.13 -0.3 4,336,581 - Pf1N1B4_3905 0.13 -0.3 4,336,603 - Pf1N1B4_3905 0.22 -1.6 4,336,603 - Pf1N1B4_3905 0.22 +0.1 4,336,603 - Pf1N1B4_3905 0.22 -1.3 4,336,649 + Pf1N1B4_3905 0.42 -2.3 4,336,650 - Pf1N1B4_3905 0.42 -0.7 4,336,650 - +0.7 4,336,650 - Pf1N1B4_3905 0.42 -1.9 4,336,835 + -0.3 4,336,835 + +1.0 4,336,835 + -0.3 4,336,835 + -0.3 4,336,837 + -0.3 4,336,837 + +0.7 4,336,837 + -0.9 4,336,837 + +0.8 4,336,837 + -0.3 4,336,837 + -0.3 4,336,837 + +2.0 4,336,839 + +0.3 4,336,877 + +1.7 4,336,877 + +1.0 4,336,877 + +0.0 4,336,877 + +0.0
Or see this region's nucleotide sequence