Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1805 and Pf1N1B4_1806 overlap by 4 nucleotides Pf1N1B4_1806 and Pf1N1B4_1807 are separated by 10 nucleotides Pf1N1B4_1807 and Pf1N1B4_1808 are separated by 29 nucleotides Pf1N1B4_1808 and Pf1N1B4_1809 are separated by 135 nucleotides
Pf1N1B4_1805 - PROBABLE REMNANT OF A TRANSPOSASE GENE PROTEIN, at 2,072,919 to 2,073,695
_1805
Pf1N1B4_1806 - FIG00953743: hypothetical protein, at 2,073,692 to 2,074,624
_1806
Pf1N1B4_1807 - Non-ribosomal peptide synthetase modules and related proteins, at 2,074,635 to 2,078,069
_1807
Pf1N1B4_1808 - FIG00958473: hypothetical protein, at 2,078,099 to 2,078,569
_1808
Pf1N1B4_1809 - Chemotactic transducer, at 2,078,705 to 2,080,642
_1809
Position (kb)
2074
2075
2076
2077
2078
2079 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2073.885 kb on - strand, within Pf1N1B4_1806 at 2074.015 kb on - strand, within Pf1N1B4_1806 at 2074.015 kb on - strand, within Pf1N1B4_1806 at 2074.015 kb on - strand, within Pf1N1B4_1806 at 2074.025 kb on + strand, within Pf1N1B4_1806 at 2074.401 kb on - strand, within Pf1N1B4_1806 at 2074.401 kb on - strand, within Pf1N1B4_1806 at 2074.509 kb on - strand, within Pf1N1B4_1806 at 2074.509 kb on - strand, within Pf1N1B4_1806 at 2074.610 kb on + strand at 2074.823 kb on - strand at 2074.823 kb on - strand at 2074.823 kb on - strand at 2075.244 kb on + strand, within Pf1N1B4_1807 at 2075.367 kb on + strand, within Pf1N1B4_1807 at 2075.367 kb on + strand, within Pf1N1B4_1807 at 2075.368 kb on - strand, within Pf1N1B4_1807 at 2075.406 kb on + strand, within Pf1N1B4_1807 at 2075.406 kb on + strand, within Pf1N1B4_1807 at 2075.406 kb on + strand, within Pf1N1B4_1807 at 2075.406 kb on + strand, within Pf1N1B4_1807 at 2075.619 kb on + strand, within Pf1N1B4_1807 at 2075.619 kb on + strand, within Pf1N1B4_1807 at 2075.619 kb on + strand, within Pf1N1B4_1807 at 2075.619 kb on + strand, within Pf1N1B4_1807 at 2075.619 kb on + strand, within Pf1N1B4_1807 at 2075.619 kb on + strand, within Pf1N1B4_1807 at 2075.620 kb on - strand, within Pf1N1B4_1807 at 2075.775 kb on - strand, within Pf1N1B4_1807 at 2076.017 kb on + strand, within Pf1N1B4_1807 at 2076.017 kb on + strand, within Pf1N1B4_1807 at 2076.017 kb on + strand, within Pf1N1B4_1807 at 2076.017 kb on + strand, within Pf1N1B4_1807 at 2076.017 kb on + strand, within Pf1N1B4_1807 at 2076.017 kb on + strand, within Pf1N1B4_1807 at 2076.017 kb on + strand, within Pf1N1B4_1807 at 2076.017 kb on + strand, within Pf1N1B4_1807 at 2076.017 kb on + strand, within Pf1N1B4_1807 at 2076.018 kb on - strand, within Pf1N1B4_1807 at 2076.018 kb on - strand, within Pf1N1B4_1807 at 2076.018 kb on - strand, within Pf1N1B4_1807 at 2076.018 kb on - strand, within Pf1N1B4_1807 at 2076.021 kb on + strand, within Pf1N1B4_1807 at 2076.021 kb on + strand, within Pf1N1B4_1807 at 2076.021 kb on + strand, within Pf1N1B4_1807 at 2076.022 kb on - strand, within Pf1N1B4_1807 at 2076.022 kb on - strand, within Pf1N1B4_1807 at 2076.022 kb on - strand, within Pf1N1B4_1807 at 2076.022 kb on - strand, within Pf1N1B4_1807 at 2076.174 kb on + strand, within Pf1N1B4_1807 at 2076.174 kb on + strand, within Pf1N1B4_1807 at 2076.174 kb on + strand, within Pf1N1B4_1807 at 2076.174 kb on + strand, within Pf1N1B4_1807 at 2076.174 kb on + strand, within Pf1N1B4_1807 at 2076.174 kb on + strand, within Pf1N1B4_1807 at 2076.174 kb on + strand, within Pf1N1B4_1807 at 2076.174 kb on + strand, within Pf1N1B4_1807 at 2076.175 kb on - strand, within Pf1N1B4_1807 at 2076.175 kb on - strand, within Pf1N1B4_1807 at 2076.175 kb on - strand, within Pf1N1B4_1807 at 2076.175 kb on - strand, within Pf1N1B4_1807 at 2076.424 kb on + strand, within Pf1N1B4_1807 at 2076.424 kb on + strand, within Pf1N1B4_1807 at 2076.424 kb on + strand, within Pf1N1B4_1807 at 2076.425 kb on - strand, within Pf1N1B4_1807 at 2076.425 kb on - strand, within Pf1N1B4_1807 at 2076.425 kb on - strand, within Pf1N1B4_1807 at 2076.463 kb on - strand, within Pf1N1B4_1807 at 2076.543 kb on + strand, within Pf1N1B4_1807 at 2076.543 kb on + strand, within Pf1N1B4_1807 at 2076.543 kb on + strand, within Pf1N1B4_1807 at 2076.561 kb on + strand, within Pf1N1B4_1807 at 2076.561 kb on + strand, within Pf1N1B4_1807 at 2076.562 kb on - strand, within Pf1N1B4_1807 at 2076.562 kb on - strand, within Pf1N1B4_1807 at 2076.586 kb on - strand, within Pf1N1B4_1807 at 2076.991 kb on + strand, within Pf1N1B4_1807 at 2076.991 kb on + strand, within Pf1N1B4_1807 at 2076.991 kb on + strand, within Pf1N1B4_1807 at 2076.991 kb on + strand, within Pf1N1B4_1807 at 2076.991 kb on + strand, within Pf1N1B4_1807 at 2076.991 kb on + strand, within Pf1N1B4_1807 at 2076.991 kb on + strand, within Pf1N1B4_1807 at 2076.991 kb on + strand, within Pf1N1B4_1807 at 2076.991 kb on + strand, within Pf1N1B4_1807 at 2076.991 kb on + strand, within Pf1N1B4_1807 at 2076.991 kb on + strand, within Pf1N1B4_1807 at 2076.991 kb on + strand, within Pf1N1B4_1807 at 2076.992 kb on - strand, within Pf1N1B4_1807 at 2076.992 kb on - strand, within Pf1N1B4_1807 at 2076.992 kb on - strand, within Pf1N1B4_1807 at 2076.992 kb on - strand, within Pf1N1B4_1807 at 2076.992 kb on - strand, within Pf1N1B4_1807 at 2076.992 kb on - strand, within Pf1N1B4_1807 at 2076.992 kb on - strand, within Pf1N1B4_1807 at 2076.992 kb on - strand, within Pf1N1B4_1807 at 2076.992 kb on - strand, within Pf1N1B4_1807 at 2076.995 kb on + strand, within Pf1N1B4_1807 at 2076.995 kb on + strand, within Pf1N1B4_1807 at 2076.995 kb on + strand, within Pf1N1B4_1807 at 2076.995 kb on + strand, within Pf1N1B4_1807 at 2076.995 kb on + strand, within Pf1N1B4_1807 at 2076.995 kb on + strand, within Pf1N1B4_1807 at 2076.996 kb on - strand, within Pf1N1B4_1807 at 2076.996 kb on - strand, within Pf1N1B4_1807 at 2076.996 kb on - strand, within Pf1N1B4_1807 at 2076.996 kb on - strand, within Pf1N1B4_1807 at 2076.996 kb on - strand, within Pf1N1B4_1807 at 2076.996 kb on - strand, within Pf1N1B4_1807 at 2076.996 kb on - strand, within Pf1N1B4_1807 at 2076.996 kb on - strand, within Pf1N1B4_1807 at 2076.996 kb on - strand at 2077.033 kb on + strand, within Pf1N1B4_1807 at 2077.300 kb on - strand, within Pf1N1B4_1807 at 2077.467 kb on + strand, within Pf1N1B4_1807 at 2077.467 kb on + strand, within Pf1N1B4_1807 at 2077.467 kb on + strand, within Pf1N1B4_1807 at 2077.467 kb on + strand, within Pf1N1B4_1807 at 2077.467 kb on + strand, within Pf1N1B4_1807 at 2077.467 kb on + strand, within Pf1N1B4_1807 at 2077.467 kb on + strand, within Pf1N1B4_1807 at 2077.468 kb on - strand, within Pf1N1B4_1807 at 2077.468 kb on - strand, within Pf1N1B4_1807 at 2077.483 kb on - strand, within Pf1N1B4_1807 at 2077.483 kb on - strand, within Pf1N1B4_1807 at 2077.794 kb on + strand at 2077.794 kb on + strand at 2077.912 kb on - strand at 2077.912 kb on - strand at 2078.043 kb on + strand at 2078.043 kb on + strand at 2078.044 kb on - strand at 2078.044 kb on - strand at 2078.044 kb on - strand at 2078.104 kb on + strand at 2078.104 kb on + strand at 2078.104 kb on + strand at 2078.105 kb on - strand at 2078.105 kb on - strand at 2078.105 kb on - strand at 2078.105 kb on - strand at 2078.105 kb on - strand at 2078.105 kb on - strand at 2078.105 kb on - strand at 2078.170 kb on - strand, within Pf1N1B4_1808 at 2078.375 kb on + strand, within Pf1N1B4_1808 at 2078.375 kb on + strand, within Pf1N1B4_1808 at 2078.375 kb on + strand, within Pf1N1B4_1808 at 2078.375 kb on + strand, within Pf1N1B4_1808 at 2078.375 kb on + strand, within Pf1N1B4_1808 at 2078.375 kb on + strand, within Pf1N1B4_1808 at 2078.375 kb on + strand at 2078.375 kb on + strand, within Pf1N1B4_1808 at 2078.375 kb on + strand, within Pf1N1B4_1808 at 2078.375 kb on + strand, within Pf1N1B4_1808 at 2078.375 kb on + strand, within Pf1N1B4_1808 at 2078.375 kb on + strand, within Pf1N1B4_1808 at 2078.376 kb on - strand, within Pf1N1B4_1808 at 2078.376 kb on - strand, within Pf1N1B4_1808 at 2078.376 kb on - strand, within Pf1N1B4_1808 at 2078.376 kb on - strand, within Pf1N1B4_1808 at 2078.376 kb on - strand, within Pf1N1B4_1808 at 2078.376 kb on - strand, within Pf1N1B4_1808 at 2078.376 kb on - strand, within Pf1N1B4_1808 at 2078.376 kb on - strand, within Pf1N1B4_1808 at 2078.376 kb on - strand, within Pf1N1B4_1808 at 2078.392 kb on - strand, within Pf1N1B4_1808 at 2078.595 kb on + strand at 2078.595 kb on + strand at 2078.595 kb on + strand at 2078.595 kb on + strand at 2078.601 kb on + strand at 2078.637 kb on + strand at 2078.637 kb on + strand at 2078.638 kb on - strand at 2078.638 kb on - strand at 2078.719 kb on + strand at 2078.719 kb on + strand at 2078.719 kb on + strand at 2078.719 kb on + strand at 2078.719 kb on + strand at 2078.719 kb on + strand at 2078.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 2,073,885 - Pf1N1B4_1806 0.21 -0.6 2,074,015 - Pf1N1B4_1806 0.35 +1.0 2,074,015 - Pf1N1B4_1806 0.35 -0.6 2,074,015 - Pf1N1B4_1806 0.35 +0.4 2,074,025 + Pf1N1B4_1806 0.36 -0.6 2,074,401 - Pf1N1B4_1806 0.76 -1.0 2,074,401 - Pf1N1B4_1806 0.76 +0.6 2,074,509 - Pf1N1B4_1806 0.88 -1.4 2,074,509 - Pf1N1B4_1806 0.88 +1.4 2,074,610 + +0.4 2,074,823 - +2.4 2,074,823 - +0.0 2,074,823 - +1.4 2,075,244 + Pf1N1B4_1807 0.18 +0.4 2,075,367 + Pf1N1B4_1807 0.21 +1.4 2,075,367 + Pf1N1B4_1807 0.21 +0.4 2,075,368 - Pf1N1B4_1807 0.21 +1.7 2,075,406 + Pf1N1B4_1807 0.22 +1.4 2,075,406 + Pf1N1B4_1807 0.22 -1.4 2,075,406 + Pf1N1B4_1807 0.22 -1.5 2,075,406 + Pf1N1B4_1807 0.22 -0.2 2,075,619 + Pf1N1B4_1807 0.29 +0.4 2,075,619 + Pf1N1B4_1807 0.29 +2.4 2,075,619 + Pf1N1B4_1807 0.29 -1.0 2,075,619 + Pf1N1B4_1807 0.29 +0.4 2,075,619 + Pf1N1B4_1807 0.29 -1.2 2,075,619 + Pf1N1B4_1807 0.29 +1.4 2,075,620 - Pf1N1B4_1807 0.29 +0.4 2,075,775 - Pf1N1B4_1807 0.33 -1.2 2,076,017 + Pf1N1B4_1807 0.40 -1.2 2,076,017 + Pf1N1B4_1807 0.40 +1.4 2,076,017 + Pf1N1B4_1807 0.40 +1.4 2,076,017 + Pf1N1B4_1807 0.40 +0.4 2,076,017 + Pf1N1B4_1807 0.40 +2.0 2,076,017 + Pf1N1B4_1807 0.40 +0.4 2,076,017 + Pf1N1B4_1807 0.40 -0.6 2,076,017 + Pf1N1B4_1807 0.40 +0.6 2,076,017 + Pf1N1B4_1807 0.40 +0.4 2,076,018 - Pf1N1B4_1807 0.40 -0.1 2,076,018 - Pf1N1B4_1807 0.40 +1.6 2,076,018 - Pf1N1B4_1807 0.40 -1.2 2,076,018 - Pf1N1B4_1807 0.40 -0.6 2,076,021 + Pf1N1B4_1807 0.40 +1.0 2,076,021 + Pf1N1B4_1807 0.40 +0.2 2,076,021 + Pf1N1B4_1807 0.40 +2.7 2,076,022 - Pf1N1B4_1807 0.40 +1.7 2,076,022 - Pf1N1B4_1807 0.40 +0.4 2,076,022 - Pf1N1B4_1807 0.40 +1.4 2,076,022 - Pf1N1B4_1807 0.40 +0.4 2,076,174 + Pf1N1B4_1807 0.45 +0.4 2,076,174 + Pf1N1B4_1807 0.45 -1.5 2,076,174 + Pf1N1B4_1807 0.45 -1.0 2,076,174 + Pf1N1B4_1807 0.45 -0.6 2,076,174 + Pf1N1B4_1807 0.45 +0.4 2,076,174 + Pf1N1B4_1807 0.45 -0.6 2,076,174 + Pf1N1B4_1807 0.45 +0.4 2,076,174 + Pf1N1B4_1807 0.45 -1.2 2,076,175 - Pf1N1B4_1807 0.45 -0.6 2,076,175 - Pf1N1B4_1807 0.45 +1.0 2,076,175 - Pf1N1B4_1807 0.45 -1.6 2,076,175 - Pf1N1B4_1807 0.45 +0.1 2,076,424 + Pf1N1B4_1807 0.52 -0.2 2,076,424 + Pf1N1B4_1807 0.52 +0.4 2,076,424 + Pf1N1B4_1807 0.52 -0.2 2,076,425 - Pf1N1B4_1807 0.52 -0.6 2,076,425 - Pf1N1B4_1807 0.52 -0.6 2,076,425 - Pf1N1B4_1807 0.52 +0.0 2,076,463 - Pf1N1B4_1807 0.53 -0.2 2,076,543 + Pf1N1B4_1807 0.56 +1.4 2,076,543 + Pf1N1B4_1807 0.56 +0.4 2,076,543 + Pf1N1B4_1807 0.56 +0.4 2,076,561 + Pf1N1B4_1807 0.56 -1.4 2,076,561 + Pf1N1B4_1807 0.56 +0.4 2,076,562 - Pf1N1B4_1807 0.56 -0.6 2,076,562 - Pf1N1B4_1807 0.56 -0.6 2,076,586 - Pf1N1B4_1807 0.57 +1.4 2,076,991 + Pf1N1B4_1807 0.69 -0.5 2,076,991 + Pf1N1B4_1807 0.69 +1.1 2,076,991 + Pf1N1B4_1807 0.69 +0.4 2,076,991 + Pf1N1B4_1807 0.69 -0.1 2,076,991 + Pf1N1B4_1807 0.69 +1.0 2,076,991 + Pf1N1B4_1807 0.69 +0.1 2,076,991 + Pf1N1B4_1807 0.69 -1.2 2,076,991 + Pf1N1B4_1807 0.69 +1.4 2,076,991 + Pf1N1B4_1807 0.69 +0.4 2,076,991 + Pf1N1B4_1807 0.69 +0.4 2,076,991 + Pf1N1B4_1807 0.69 -0.6 2,076,991 + Pf1N1B4_1807 0.69 +2.0 2,076,992 - Pf1N1B4_1807 0.69 -1.6 2,076,992 - Pf1N1B4_1807 0.69 -0.1 2,076,992 - Pf1N1B4_1807 0.69 +0.8 2,076,992 - Pf1N1B4_1807 0.69 -0.4 2,076,992 - Pf1N1B4_1807 0.69 +0.7 2,076,992 - Pf1N1B4_1807 0.69 -0.6 2,076,992 - Pf1N1B4_1807 0.69 -1.2 2,076,992 - Pf1N1B4_1807 0.69 +3.4 2,076,992 - Pf1N1B4_1807 0.69 -1.2 2,076,995 + Pf1N1B4_1807 0.69 -1.0 2,076,995 + Pf1N1B4_1807 0.69 -1.6 2,076,995 + Pf1N1B4_1807 0.69 +1.4 2,076,995 + Pf1N1B4_1807 0.69 -0.6 2,076,995 + Pf1N1B4_1807 0.69 -1.6 2,076,995 + Pf1N1B4_1807 0.69 -0.7 2,076,996 - Pf1N1B4_1807 0.69 +1.4 2,076,996 - Pf1N1B4_1807 0.69 -0.6 2,076,996 - Pf1N1B4_1807 0.69 +0.7 2,076,996 - Pf1N1B4_1807 0.69 +2.7 2,076,996 - Pf1N1B4_1807 0.69 -0.6 2,076,996 - Pf1N1B4_1807 0.69 -0.6 2,076,996 - Pf1N1B4_1807 0.69 +0.4 2,076,996 - Pf1N1B4_1807 0.69 +2.4 2,076,996 - -0.6 2,077,033 + Pf1N1B4_1807 0.70 +0.7 2,077,300 - Pf1N1B4_1807 0.78 -0.6 2,077,467 + Pf1N1B4_1807 0.82 -1.6 2,077,467 + Pf1N1B4_1807 0.82 -2.0 2,077,467 + Pf1N1B4_1807 0.82 +0.4 2,077,467 + Pf1N1B4_1807 0.82 -1.6 2,077,467 + Pf1N1B4_1807 0.82 +1.0 2,077,467 + Pf1N1B4_1807 0.82 -0.6 2,077,467 + Pf1N1B4_1807 0.82 +2.5 2,077,468 - Pf1N1B4_1807 0.82 +0.4 2,077,468 - Pf1N1B4_1807 0.82 +0.6 2,077,483 - Pf1N1B4_1807 0.83 -1.2 2,077,483 - Pf1N1B4_1807 0.83 +1.0 2,077,794 + -2.0 2,077,794 + -0.9 2,077,912 - -1.4 2,077,912 - +0.7 2,078,043 + +1.4 2,078,043 + +0.4 2,078,044 - +1.0 2,078,044 - +0.4 2,078,044 - -0.6 2,078,104 + +0.4 2,078,104 + +1.7 2,078,104 + +0.4 2,078,105 - +0.4 2,078,105 - +0.7 2,078,105 - +0.6 2,078,105 - -1.0 2,078,105 - -0.2 2,078,105 - -0.6 2,078,105 - -0.6 2,078,170 - Pf1N1B4_1808 0.15 +1.0 2,078,375 + Pf1N1B4_1808 0.59 -0.2 2,078,375 + Pf1N1B4_1808 0.59 +1.4 2,078,375 + Pf1N1B4_1808 0.59 -0.2 2,078,375 + Pf1N1B4_1808 0.59 -0.6 2,078,375 + Pf1N1B4_1808 0.59 -0.0 2,078,375 + Pf1N1B4_1808 0.59 -1.0 2,078,375 + +0.4 2,078,375 + Pf1N1B4_1808 0.59 +1.4 2,078,375 + Pf1N1B4_1808 0.59 -1.0 2,078,375 + Pf1N1B4_1808 0.59 -0.4 2,078,375 + Pf1N1B4_1808 0.59 +1.0 2,078,375 + Pf1N1B4_1808 0.59 +1.7 2,078,376 - Pf1N1B4_1808 0.59 +0.4 2,078,376 - Pf1N1B4_1808 0.59 -0.6 2,078,376 - Pf1N1B4_1808 0.59 +0.8 2,078,376 - Pf1N1B4_1808 0.59 +2.0 2,078,376 - Pf1N1B4_1808 0.59 +0.1 2,078,376 - Pf1N1B4_1808 0.59 +0.8 2,078,376 - Pf1N1B4_1808 0.59 -0.4 2,078,376 - Pf1N1B4_1808 0.59 +1.7 2,078,376 - Pf1N1B4_1808 0.59 -0.6 2,078,392 - Pf1N1B4_1808 0.62 -1.2 2,078,595 + +0.1 2,078,595 + +0.4 2,078,595 + +0.8 2,078,595 + -0.6 2,078,601 + +0.4 2,078,637 + +2.0 2,078,637 + -0.2 2,078,638 - +1.0 2,078,638 - +1.4 2,078,719 + -0.6 2,078,719 + +0.4 2,078,719 + +0.4 2,078,719 + +0.4 2,078,719 + +2.0 2,078,719 + -0.9 2,078,720 - +0.4
Or see this region's nucleotide sequence