Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1370 and Pf1N1B4_1371 are separated by 298 nucleotides Pf1N1B4_1371 and Pf1N1B4_1372 overlap by 4 nucleotides Pf1N1B4_1372 and Pf1N1B4_1373 are separated by 37 nucleotides
Pf1N1B4_1370 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 1,569,228 to 1,569,860
_1370
Pf1N1B4_1371 - Urease accessory protein UreE, at 1,570,159 to 1,570,659
_1371
Pf1N1B4_1372 - Urease accessory protein UreF, at 1,570,656 to 1,571,330
_1372
Pf1N1B4_1373 - Urease accessory protein UreG, at 1,571,368 to 1,571,982
_1373
Position (kb)
1570
1571 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1569.189 kb on + strand at 1569.189 kb on + strand at 1569.372 kb on + strand, within Pf1N1B4_1370 at 1569.568 kb on - strand, within Pf1N1B4_1370 at 1569.859 kb on - strand at 1570.092 kb on - strand at 1570.313 kb on - strand, within Pf1N1B4_1371 at 1570.328 kb on + strand, within Pf1N1B4_1371 at 1570.328 kb on + strand, within Pf1N1B4_1371 at 1570.328 kb on + strand, within Pf1N1B4_1371 at 1570.328 kb on + strand, within Pf1N1B4_1371 at 1570.329 kb on - strand, within Pf1N1B4_1371 at 1570.329 kb on - strand, within Pf1N1B4_1371 at 1570.329 kb on - strand, within Pf1N1B4_1371 at 1570.349 kb on + strand, within Pf1N1B4_1371 at 1570.492 kb on + strand, within Pf1N1B4_1371 at 1570.492 kb on + strand, within Pf1N1B4_1371 at 1570.492 kb on + strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.497 kb on - strand, within Pf1N1B4_1371 at 1570.497 kb on - strand, within Pf1N1B4_1371 at 1570.497 kb on - strand, within Pf1N1B4_1371 at 1570.497 kb on - strand, within Pf1N1B4_1371 at 1570.573 kb on + strand, within Pf1N1B4_1371 at 1570.656 kb on - strand at 1570.714 kb on - strand at 1570.719 kb on + strand at 1570.719 kb on + strand at 1570.719 kb on + strand at 1570.719 kb on + strand at 1570.720 kb on - strand at 1570.720 kb on - strand at 1570.720 kb on - strand at 1570.957 kb on - strand, within Pf1N1B4_1372 at 1571.307 kb on + strand at 1571.307 kb on + strand at 1571.308 kb on - strand at 1571.308 kb on - strand at 1571.328 kb on + strand at 1571.338 kb on + strand at 1571.339 kb on - strand at 1571.352 kb on + strand at 1571.352 kb on + strand at 1571.353 kb on - strand at 1571.494 kb on + strand, within Pf1N1B4_1373 at 1571.494 kb on + strand, within Pf1N1B4_1373 at 1571.494 kb on + strand, within Pf1N1B4_1373 at 1571.494 kb on + strand, within Pf1N1B4_1373 at 1571.494 kb on + strand, within Pf1N1B4_1373 at 1571.495 kb on - strand, within Pf1N1B4_1373 at 1571.495 kb on - strand, within Pf1N1B4_1373 at 1571.495 kb on - strand, within Pf1N1B4_1373 at 1571.495 kb on - strand, within Pf1N1B4_1373 at 1571.495 kb on - strand, within Pf1N1B4_1373 at 1571.495 kb on - strand, within Pf1N1B4_1373 at 1571.495 kb on - strand, within Pf1N1B4_1373 at 1571.495 kb on - strand, within Pf1N1B4_1373
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 1,569,189 + +0.2 1,569,189 + -0.8 1,569,372 + Pf1N1B4_1370 0.23 +0.8 1,569,568 - Pf1N1B4_1370 0.54 +0.2 1,569,859 - +0.3 1,570,092 - -0.4 1,570,313 - Pf1N1B4_1371 0.31 -1.4 1,570,328 + Pf1N1B4_1371 0.34 +0.2 1,570,328 + Pf1N1B4_1371 0.34 +0.2 1,570,328 + Pf1N1B4_1371 0.34 -1.4 1,570,328 + Pf1N1B4_1371 0.34 -1.4 1,570,329 - Pf1N1B4_1371 0.34 -2.4 1,570,329 - Pf1N1B4_1371 0.34 -0.8 1,570,329 - Pf1N1B4_1371 0.34 -1.1 1,570,349 + Pf1N1B4_1371 0.38 -0.8 1,570,492 + Pf1N1B4_1371 0.66 +0.8 1,570,492 + Pf1N1B4_1371 0.66 -1.1 1,570,492 + Pf1N1B4_1371 0.66 +0.8 1,570,493 - Pf1N1B4_1371 0.67 +0.8 1,570,493 - Pf1N1B4_1371 0.67 -0.5 1,570,493 - Pf1N1B4_1371 0.67 +0.2 1,570,493 - Pf1N1B4_1371 0.67 -0.8 1,570,493 - Pf1N1B4_1371 0.67 -2.6 1,570,493 - Pf1N1B4_1371 0.67 -0.4 1,570,493 - Pf1N1B4_1371 0.67 +0.2 1,570,493 - Pf1N1B4_1371 0.67 -0.8 1,570,493 - Pf1N1B4_1371 0.67 -0.3 1,570,496 + Pf1N1B4_1371 0.67 +0.2 1,570,496 + Pf1N1B4_1371 0.67 -0.8 1,570,496 + Pf1N1B4_1371 0.67 +0.2 1,570,496 + Pf1N1B4_1371 0.67 +0.8 1,570,496 + Pf1N1B4_1371 0.67 -1.8 1,570,496 + Pf1N1B4_1371 0.67 +0.2 1,570,496 + Pf1N1B4_1371 0.67 -1.0 1,570,496 + Pf1N1B4_1371 0.67 -1.4 1,570,497 - Pf1N1B4_1371 0.67 -0.8 1,570,497 - Pf1N1B4_1371 0.67 -0.5 1,570,497 - Pf1N1B4_1371 0.67 -0.4 1,570,497 - Pf1N1B4_1371 0.67 +1.8 1,570,573 + Pf1N1B4_1371 0.83 +2.2 1,570,656 - -0.9 1,570,714 - -0.4 1,570,719 + +1.2 1,570,719 + -0.8 1,570,719 + +0.8 1,570,719 + -0.5 1,570,720 - -0.8 1,570,720 - -1.8 1,570,720 - -0.8 1,570,957 - Pf1N1B4_1372 0.45 -1.1 1,571,307 + -1.4 1,571,307 + -0.2 1,571,308 - -3.0 1,571,308 - -0.8 1,571,328 + -0.1 1,571,338 + +2.3 1,571,339 - -0.8 1,571,352 + +3.2 1,571,352 + +1.0 1,571,353 - +1.8 1,571,494 + Pf1N1B4_1373 0.20 -2.6 1,571,494 + Pf1N1B4_1373 0.20 -0.8 1,571,494 + Pf1N1B4_1373 0.20 -0.4 1,571,494 + Pf1N1B4_1373 0.20 -0.8 1,571,494 + Pf1N1B4_1373 0.20 -2.4 1,571,495 - Pf1N1B4_1373 0.21 -0.8 1,571,495 - Pf1N1B4_1373 0.21 +0.2 1,571,495 - Pf1N1B4_1373 0.21 -2.1 1,571,495 - Pf1N1B4_1373 0.21 -1.4 1,571,495 - Pf1N1B4_1373 0.21 -0.5 1,571,495 - Pf1N1B4_1373 0.21 -1.8 1,571,495 - Pf1N1B4_1373 0.21 +1.2 1,571,495 - Pf1N1B4_1373 0.21 -1.8
Or see this region's nucleotide sequence