Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1371

Experiment: Adenine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_1370 and Pf1N1B4_1371 are separated by 298 nucleotidesPf1N1B4_1371 and Pf1N1B4_1372 overlap by 4 nucleotidesPf1N1B4_1372 and Pf1N1B4_1373 are separated by 37 nucleotides Pf1N1B4_1370 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 1,569,228 to 1,569,860 _1370 Pf1N1B4_1371 - Urease accessory protein UreE, at 1,570,159 to 1,570,659 _1371 Pf1N1B4_1372 - Urease accessory protein UreF, at 1,570,656 to 1,571,330 _1372 Pf1N1B4_1373 - Urease accessory protein UreG, at 1,571,368 to 1,571,982 _1373 Position (kb) 1570 1571Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1569.189 kb on + strandat 1569.189 kb on + strandat 1569.372 kb on + strand, within Pf1N1B4_1370at 1569.568 kb on - strand, within Pf1N1B4_1370at 1569.859 kb on - strandat 1570.092 kb on - strandat 1570.313 kb on - strand, within Pf1N1B4_1371at 1570.328 kb on + strand, within Pf1N1B4_1371at 1570.328 kb on + strand, within Pf1N1B4_1371at 1570.328 kb on + strand, within Pf1N1B4_1371at 1570.328 kb on + strand, within Pf1N1B4_1371at 1570.329 kb on - strand, within Pf1N1B4_1371at 1570.329 kb on - strand, within Pf1N1B4_1371at 1570.329 kb on - strand, within Pf1N1B4_1371at 1570.349 kb on + strand, within Pf1N1B4_1371at 1570.492 kb on + strand, within Pf1N1B4_1371at 1570.492 kb on + strand, within Pf1N1B4_1371at 1570.492 kb on + strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.497 kb on - strand, within Pf1N1B4_1371at 1570.497 kb on - strand, within Pf1N1B4_1371at 1570.497 kb on - strand, within Pf1N1B4_1371at 1570.497 kb on - strand, within Pf1N1B4_1371at 1570.573 kb on + strand, within Pf1N1B4_1371at 1570.656 kb on - strandat 1570.714 kb on - strandat 1570.719 kb on + strandat 1570.719 kb on + strandat 1570.719 kb on + strandat 1570.719 kb on + strandat 1570.720 kb on - strandat 1570.720 kb on - strandat 1570.720 kb on - strandat 1570.957 kb on - strand, within Pf1N1B4_1372at 1571.307 kb on + strandat 1571.307 kb on + strandat 1571.308 kb on - strandat 1571.308 kb on - strandat 1571.328 kb on + strandat 1571.338 kb on + strandat 1571.339 kb on - strandat 1571.352 kb on + strandat 1571.352 kb on + strandat 1571.353 kb on - strandat 1571.494 kb on + strand, within Pf1N1B4_1373at 1571.494 kb on + strand, within Pf1N1B4_1373at 1571.494 kb on + strand, within Pf1N1B4_1373at 1571.494 kb on + strand, within Pf1N1B4_1373at 1571.494 kb on + strand, within Pf1N1B4_1373at 1571.495 kb on - strand, within Pf1N1B4_1373at 1571.495 kb on - strand, within Pf1N1B4_1373at 1571.495 kb on - strand, within Pf1N1B4_1373at 1571.495 kb on - strand, within Pf1N1B4_1373at 1571.495 kb on - strand, within Pf1N1B4_1373at 1571.495 kb on - strand, within Pf1N1B4_1373at 1571.495 kb on - strand, within Pf1N1B4_1373at 1571.495 kb on - strand, within Pf1N1B4_1373

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
remove
1,569,189 + +0.2
1,569,189 + -0.8
1,569,372 + Pf1N1B4_1370 0.23 +0.8
1,569,568 - Pf1N1B4_1370 0.54 +0.2
1,569,859 - +0.3
1,570,092 - -0.4
1,570,313 - Pf1N1B4_1371 0.31 -1.4
1,570,328 + Pf1N1B4_1371 0.34 +0.2
1,570,328 + Pf1N1B4_1371 0.34 +0.2
1,570,328 + Pf1N1B4_1371 0.34 -1.4
1,570,328 + Pf1N1B4_1371 0.34 -1.4
1,570,329 - Pf1N1B4_1371 0.34 -2.4
1,570,329 - Pf1N1B4_1371 0.34 -0.8
1,570,329 - Pf1N1B4_1371 0.34 -1.1
1,570,349 + Pf1N1B4_1371 0.38 -0.8
1,570,492 + Pf1N1B4_1371 0.66 +0.8
1,570,492 + Pf1N1B4_1371 0.66 -1.1
1,570,492 + Pf1N1B4_1371 0.66 +0.8
1,570,493 - Pf1N1B4_1371 0.67 +0.8
1,570,493 - Pf1N1B4_1371 0.67 -0.5
1,570,493 - Pf1N1B4_1371 0.67 +0.2
1,570,493 - Pf1N1B4_1371 0.67 -0.8
1,570,493 - Pf1N1B4_1371 0.67 -2.6
1,570,493 - Pf1N1B4_1371 0.67 -0.4
1,570,493 - Pf1N1B4_1371 0.67 +0.2
1,570,493 - Pf1N1B4_1371 0.67 -0.8
1,570,493 - Pf1N1B4_1371 0.67 -0.3
1,570,496 + Pf1N1B4_1371 0.67 +0.2
1,570,496 + Pf1N1B4_1371 0.67 -0.8
1,570,496 + Pf1N1B4_1371 0.67 +0.2
1,570,496 + Pf1N1B4_1371 0.67 +0.8
1,570,496 + Pf1N1B4_1371 0.67 -1.8
1,570,496 + Pf1N1B4_1371 0.67 +0.2
1,570,496 + Pf1N1B4_1371 0.67 -1.0
1,570,496 + Pf1N1B4_1371 0.67 -1.4
1,570,497 - Pf1N1B4_1371 0.67 -0.8
1,570,497 - Pf1N1B4_1371 0.67 -0.5
1,570,497 - Pf1N1B4_1371 0.67 -0.4
1,570,497 - Pf1N1B4_1371 0.67 +1.8
1,570,573 + Pf1N1B4_1371 0.83 +2.2
1,570,656 - -0.9
1,570,714 - -0.4
1,570,719 + +1.2
1,570,719 + -0.8
1,570,719 + +0.8
1,570,719 + -0.5
1,570,720 - -0.8
1,570,720 - -1.8
1,570,720 - -0.8
1,570,957 - Pf1N1B4_1372 0.45 -1.1
1,571,307 + -1.4
1,571,307 + -0.2
1,571,308 - -3.0
1,571,308 - -0.8
1,571,328 + -0.1
1,571,338 + +2.3
1,571,339 - -0.8
1,571,352 + +3.2
1,571,352 + +1.0
1,571,353 - +1.8
1,571,494 + Pf1N1B4_1373 0.20 -2.6
1,571,494 + Pf1N1B4_1373 0.20 -0.8
1,571,494 + Pf1N1B4_1373 0.20 -0.4
1,571,494 + Pf1N1B4_1373 0.20 -0.8
1,571,494 + Pf1N1B4_1373 0.20 -2.4
1,571,495 - Pf1N1B4_1373 0.21 -0.8
1,571,495 - Pf1N1B4_1373 0.21 +0.2
1,571,495 - Pf1N1B4_1373 0.21 -2.1
1,571,495 - Pf1N1B4_1373 0.21 -1.4
1,571,495 - Pf1N1B4_1373 0.21 -0.5
1,571,495 - Pf1N1B4_1373 0.21 -1.8
1,571,495 - Pf1N1B4_1373 0.21 +1.2
1,571,495 - Pf1N1B4_1373 0.21 -1.8

Or see this region's nucleotide sequence