Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_130

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_129 and Pf1N1B4_130 are separated by 0 nucleotidesPf1N1B4_130 and Pf1N1B4_131 are separated by 152 nucleotidesPf1N1B4_131 and Pf1N1B4_132 are separated by 326 nucleotides Pf1N1B4_129 - sensory box histidine kinase/response regulator, at 140,909 to 144,151 _129 Pf1N1B4_130 - DNA-binding response regulator, LuxR family, at 144,152 to 144,772 _130 Pf1N1B4_131 - hypothetical protein, at 144,925 to 145,374 _131 Pf1N1B4_132 - L-ornithine 5-monooxygenase (EC 1.13.12.-), PvdA of pyoverdin biosynthesis, at 145,701 to 147,038 _132 Position (kb) 144 145Strain fitness (log2 ratio) -2 -1 0 1 2at 143.203 kb on - strand, within Pf1N1B4_129at 143.484 kb on + strand, within Pf1N1B4_129at 143.484 kb on + strand, within Pf1N1B4_129at 143.484 kb on + strand, within Pf1N1B4_129at 143.489 kb on - strand, within Pf1N1B4_129at 143.489 kb on - strand, within Pf1N1B4_129at 143.502 kb on + strand, within Pf1N1B4_129at 143.502 kb on + strand, within Pf1N1B4_129at 143.503 kb on - strand, within Pf1N1B4_129at 143.529 kb on + strand, within Pf1N1B4_129at 143.530 kb on - strand, within Pf1N1B4_129at 143.583 kb on + strand, within Pf1N1B4_129at 144.234 kb on + strand, within Pf1N1B4_130at 144.234 kb on + strand, within Pf1N1B4_130at 144.235 kb on - strand, within Pf1N1B4_130at 144.235 kb on - strand, within Pf1N1B4_130at 144.235 kb on - strand, within Pf1N1B4_130at 144.265 kb on + strand, within Pf1N1B4_130at 144.265 kb on + strand, within Pf1N1B4_130at 144.266 kb on - strand, within Pf1N1B4_130at 144.266 kb on - strand, within Pf1N1B4_130at 144.266 kb on - strand, within Pf1N1B4_130at 144.406 kb on - strand, within Pf1N1B4_130at 144.406 kb on - strand, within Pf1N1B4_130at 144.474 kb on + strand, within Pf1N1B4_130at 144.474 kb on + strand, within Pf1N1B4_130at 144.475 kb on - strand, within Pf1N1B4_130at 144.475 kb on - strand, within Pf1N1B4_130at 144.684 kb on + strand, within Pf1N1B4_130at 144.684 kb on + strand, within Pf1N1B4_130at 144.685 kb on - strand, within Pf1N1B4_130at 144.776 kb on - strandat 144.776 kb on - strandat 144.899 kb on + strandat 145.121 kb on + strand, within Pf1N1B4_131at 145.121 kb on + strand, within Pf1N1B4_131at 145.121 kb on + strandat 145.121 kb on + strand, within Pf1N1B4_131at 145.122 kb on - strand, within Pf1N1B4_131at 145.122 kb on - strand, within Pf1N1B4_131at 145.122 kb on - strand, within Pf1N1B4_131at 145.233 kb on - strand, within Pf1N1B4_131at 145.246 kb on - strand, within Pf1N1B4_131at 145.353 kb on + strandat 145.447 kb on + strandat 145.475 kb on + strandat 145.475 kb on + strandat 145.476 kb on - strandat 145.476 kb on - strandat 145.486 kb on + strandat 145.487 kb on - strandat 145.487 kb on - strandat 145.487 kb on - strandat 145.487 kb on - strandat 145.487 kb on - strandat 145.702 kb on + strandat 145.703 kb on - strandat 145.768 kb on + strandat 145.768 kb on + strandat 145.769 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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143,203 - Pf1N1B4_129 0.71 -1.3
143,484 + Pf1N1B4_129 0.79 -0.3
143,484 + Pf1N1B4_129 0.79 -1.3
143,484 + Pf1N1B4_129 0.79 +0.9
143,489 - Pf1N1B4_129 0.80 +1.7
143,489 - Pf1N1B4_129 0.80 -0.0
143,502 + Pf1N1B4_129 0.80 +1.5
143,502 + Pf1N1B4_129 0.80 -0.3
143,503 - Pf1N1B4_129 0.80 -0.7
143,529 + Pf1N1B4_129 0.81 +1.7
143,530 - Pf1N1B4_129 0.81 -2.3
143,583 + Pf1N1B4_129 0.82 +0.7
144,234 + Pf1N1B4_130 0.13 +1.9
144,234 + Pf1N1B4_130 0.13 +1.9
144,235 - Pf1N1B4_130 0.13 +0.7
144,235 - Pf1N1B4_130 0.13 +2.1
144,235 - Pf1N1B4_130 0.13 +0.7
144,265 + Pf1N1B4_130 0.18 -0.0
144,265 + Pf1N1B4_130 0.18 -0.3
144,266 - Pf1N1B4_130 0.18 +1.3
144,266 - Pf1N1B4_130 0.18 -0.0
144,266 - Pf1N1B4_130 0.18 -1.3
144,406 - Pf1N1B4_130 0.41 +0.7
144,406 - Pf1N1B4_130 0.41 -0.8
144,474 + Pf1N1B4_130 0.52 +0.7
144,474 + Pf1N1B4_130 0.52 -0.3
144,475 - Pf1N1B4_130 0.52 -0.3
144,475 - Pf1N1B4_130 0.52 -1.3
144,684 + Pf1N1B4_130 0.86 +0.3
144,684 + Pf1N1B4_130 0.86 +1.9
144,685 - Pf1N1B4_130 0.86 +1.3
144,776 - -0.8
144,776 - +0.7
144,899 + +0.7
145,121 + Pf1N1B4_131 0.44 +0.7
145,121 + Pf1N1B4_131 0.44 +0.7
145,121 + +1.3
145,121 + Pf1N1B4_131 0.44 +1.3
145,122 - Pf1N1B4_131 0.44 -0.3
145,122 - Pf1N1B4_131 0.44 -1.3
145,122 - Pf1N1B4_131 0.44 +1.7
145,233 - Pf1N1B4_131 0.68 -1.3
145,246 - Pf1N1B4_131 0.71 +0.3
145,353 + +0.1
145,447 + +0.3
145,475 + +0.7
145,475 + -1.3
145,476 - -1.3
145,476 - -2.6
145,486 + -1.3
145,487 - -0.3
145,487 - +0.7
145,487 - +1.7
145,487 - +1.7
145,487 - +1.5
145,702 + -1.5
145,703 - -0.3
145,768 + -0.3
145,768 + -0.9
145,769 - +0.1

Or see this region's nucleotide sequence