Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3486 and Dsui_3487 are separated by 127 nucleotides Dsui_3487 and Dsui_3488 are separated by 50 nucleotides Dsui_3488 and Dsui_3489 overlap by 7 nucleotides Dsui_3489 and Dsui_3490 are separated by 18 nucleotides
Dsui_3486: Dsui_3486 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,750,833 to 3,752,182
_3486
Dsui_3487: Dsui_3487 - Tfp pilus assembly protein PilE, at 3,752,310 to 3,752,771
_3487
Dsui_3488: Dsui_3488 - Tfp pilus assembly protein FimT, at 3,752,822 to 3,753,334
_3488
Dsui_3489: Dsui_3489 - hypothetical protein, at 3,753,328 to 3,753,705
_3489
Dsui_3490: Dsui_3490 - hypothetical protein, at 3,753,724 to 3,754,845
_3490
Position (kb)
3752
3753
3754 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3752.000 kb on - strand at 3752.186 kb on - strand at 3752.191 kb on - strand at 3752.194 kb on + strand at 3752.201 kb on - strand at 3752.255 kb on + strand at 3752.315 kb on - strand at 3752.320 kb on - strand at 3752.320 kb on - strand at 3752.447 kb on + strand, within Dsui_3487 at 3752.455 kb on - strand, within Dsui_3487 at 3752.474 kb on - strand, within Dsui_3487 at 3752.490 kb on - strand, within Dsui_3487 at 3752.512 kb on - strand, within Dsui_3487 at 3752.512 kb on - strand, within Dsui_3487 at 3752.542 kb on + strand, within Dsui_3487 at 3752.550 kb on - strand, within Dsui_3487 at 3752.640 kb on + strand, within Dsui_3487 at 3752.640 kb on + strand, within Dsui_3487 at 3752.679 kb on + strand, within Dsui_3487 at 3752.679 kb on + strand, within Dsui_3487 at 3752.735 kb on + strand at 3752.765 kb on + strand at 3752.770 kb on + strand at 3752.773 kb on - strand at 3752.773 kb on - strand at 3752.773 kb on - strand at 3752.826 kb on + strand at 3752.836 kb on + strand at 3752.902 kb on + strand, within Dsui_3488 at 3752.902 kb on + strand, within Dsui_3488 at 3752.902 kb on + strand, within Dsui_3488 at 3752.902 kb on + strand, within Dsui_3488 at 3752.902 kb on + strand, within Dsui_3488 at 3752.902 kb on + strand, within Dsui_3488 at 3752.902 kb on + strand, within Dsui_3488 at 3752.910 kb on - strand, within Dsui_3488 at 3752.910 kb on - strand, within Dsui_3488 at 3752.910 kb on - strand, within Dsui_3488 at 3752.958 kb on - strand, within Dsui_3488 at 3752.965 kb on + strand, within Dsui_3488 at 3752.968 kb on - strand, within Dsui_3488 at 3752.973 kb on - strand, within Dsui_3488 at 3753.010 kb on + strand, within Dsui_3488 at 3753.010 kb on + strand, within Dsui_3488 at 3753.010 kb on + strand, within Dsui_3488 at 3753.018 kb on - strand, within Dsui_3488 at 3753.023 kb on - strand, within Dsui_3488 at 3753.059 kb on - strand, within Dsui_3488 at 3753.062 kb on - strand, within Dsui_3488 at 3753.064 kb on + strand, within Dsui_3488 at 3753.090 kb on + strand, within Dsui_3488 at 3753.149 kb on - strand, within Dsui_3488 at 3753.296 kb on + strand at 3753.301 kb on + strand at 3753.304 kb on - strand at 3753.318 kb on + strand at 3753.333 kb on + strand at 3753.333 kb on + strand at 3753.343 kb on - strand at 3753.367 kb on - strand, within Dsui_3489 at 3753.510 kb on + strand, within Dsui_3489 at 3753.510 kb on + strand, within Dsui_3489 at 3753.518 kb on - strand, within Dsui_3489 at 3753.518 kb on - strand, within Dsui_3489 at 3753.551 kb on + strand, within Dsui_3489 at 3753.568 kb on + strand, within Dsui_3489 at 3753.573 kb on + strand, within Dsui_3489 at 3753.573 kb on + strand, within Dsui_3489 at 3753.628 kb on + strand, within Dsui_3489 at 3753.645 kb on - strand, within Dsui_3489 at 3753.660 kb on + strand, within Dsui_3489 at 3753.684 kb on - strand at 3753.709 kb on + strand at 3753.709 kb on + strand at 3753.709 kb on + strand at 3753.717 kb on - strand at 3753.717 kb on - strand at 3753.760 kb on + strand at 3753.760 kb on + strand at 3753.810 kb on + strand at 3753.881 kb on - strand, within Dsui_3490 at 3753.891 kb on + strand, within Dsui_3490 at 3753.920 kb on - strand, within Dsui_3490 at 3753.999 kb on - strand, within Dsui_3490 at 3754.033 kb on - strand, within Dsui_3490 at 3754.045 kb on + strand, within Dsui_3490 at 3754.148 kb on + strand, within Dsui_3490 at 3754.149 kb on + strand, within Dsui_3490 at 3754.172 kb on + strand, within Dsui_3490 at 3754.174 kb on + strand, within Dsui_3490 at 3754.180 kb on - strand, within Dsui_3490 at 3754.187 kb on + strand, within Dsui_3490 at 3754.195 kb on - strand, within Dsui_3490 at 3754.230 kb on + strand, within Dsui_3490 at 3754.310 kb on - strand, within Dsui_3490
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 3,752,000 - +0.8 3,752,186 - +0.8 3,752,191 - +0.8 3,752,194 + -1.0 3,752,201 - +0.8 3,752,255 + -0.5 3,752,315 - -0.2 3,752,320 - -2.4 3,752,320 - -0.8 3,752,447 + Dsui_3487 0.30 -0.3 3,752,455 - Dsui_3487 0.31 -0.2 3,752,474 - Dsui_3487 0.35 -0.2 3,752,490 - Dsui_3487 0.39 +1.8 3,752,512 - Dsui_3487 0.44 -1.2 3,752,512 - Dsui_3487 0.44 -2.2 3,752,542 + Dsui_3487 0.50 -0.2 3,752,550 - Dsui_3487 0.52 -1.8 3,752,640 + Dsui_3487 0.71 -1.0 3,752,640 + Dsui_3487 0.71 -0.1 3,752,679 + Dsui_3487 0.80 -0.5 3,752,679 + Dsui_3487 0.80 -0.1 3,752,735 + -0.0 3,752,765 + -0.0 3,752,770 + -1.1 3,752,773 - -1.2 3,752,773 - -0.2 3,752,773 - -1.6 3,752,826 + +0.3 3,752,836 + -0.3 3,752,902 + Dsui_3488 0.16 -0.7 3,752,902 + Dsui_3488 0.16 -0.8 3,752,902 + Dsui_3488 0.16 -2.0 3,752,902 + Dsui_3488 0.16 -1.4 3,752,902 + Dsui_3488 0.16 -0.6 3,752,902 + Dsui_3488 0.16 -0.7 3,752,902 + Dsui_3488 0.16 -0.4 3,752,910 - Dsui_3488 0.17 -2.0 3,752,910 - Dsui_3488 0.17 -0.2 3,752,910 - Dsui_3488 0.17 -0.2 3,752,958 - Dsui_3488 0.27 -2.6 3,752,965 + Dsui_3488 0.28 -0.7 3,752,968 - Dsui_3488 0.28 -0.8 3,752,973 - Dsui_3488 0.29 -0.2 3,753,010 + Dsui_3488 0.37 -0.3 3,753,010 + Dsui_3488 0.37 +0.6 3,753,010 + Dsui_3488 0.37 -0.4 3,753,018 - Dsui_3488 0.38 -0.2 3,753,023 - Dsui_3488 0.39 -1.6 3,753,059 - Dsui_3488 0.46 +0.8 3,753,062 - Dsui_3488 0.47 -1.8 3,753,064 + Dsui_3488 0.47 -0.9 3,753,090 + Dsui_3488 0.52 -0.6 3,753,149 - Dsui_3488 0.64 -0.2 3,753,296 + -0.3 3,753,301 + +0.2 3,753,304 - -0.2 3,753,318 + +0.4 3,753,333 + -0.5 3,753,333 + -0.3 3,753,343 - +0.8 3,753,367 - Dsui_3489 0.10 +0.8 3,753,510 + Dsui_3489 0.48 -0.1 3,753,510 + Dsui_3489 0.48 -1.6 3,753,518 - Dsui_3489 0.50 +0.2 3,753,518 - Dsui_3489 0.50 -0.8 3,753,551 + Dsui_3489 0.59 -0.2 3,753,568 + Dsui_3489 0.63 -0.7 3,753,573 + Dsui_3489 0.65 +0.5 3,753,573 + Dsui_3489 0.65 +0.2 3,753,628 + Dsui_3489 0.79 +0.6 3,753,645 - Dsui_3489 0.84 -1.2 3,753,660 + Dsui_3489 0.88 -0.1 3,753,684 - +0.8 3,753,709 + -0.9 3,753,709 + +1.2 3,753,709 + -0.7 3,753,717 - +0.8 3,753,717 - +0.8 3,753,760 + -0.1 3,753,760 + -0.3 3,753,810 + -0.2 3,753,881 - Dsui_3490 0.14 +0.8 3,753,891 + Dsui_3490 0.15 -0.7 3,753,920 - Dsui_3490 0.17 -2.2 3,753,999 - Dsui_3490 0.25 +0.8 3,754,033 - Dsui_3490 0.28 -0.2 3,754,045 + Dsui_3490 0.29 -0.2 3,754,148 + Dsui_3490 0.38 -0.1 3,754,149 + Dsui_3490 0.38 -0.5 3,754,172 + Dsui_3490 0.40 -0.7 3,754,174 + Dsui_3490 0.40 -0.9 3,754,180 - Dsui_3490 0.41 -0.2 3,754,187 + Dsui_3490 0.41 +0.3 3,754,195 - Dsui_3490 0.42 -0.2 3,754,230 + Dsui_3490 0.45 -0.1 3,754,310 - Dsui_3490 0.52 -1.2
Or see this region's nucleotide sequence