Strain Fitness in Dechlorosoma suillum PS around Dsui_3432

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3430 and Dsui_3431 overlap by 4 nucleotidesDsui_3431 and Dsui_3432 overlap by 1 nucleotidesDsui_3432 and Dsui_3433 are separated by 124 nucleotidesDsui_3433 and Dsui_3434 are separated by 82 nucleotides Dsui_3430: Dsui_3430 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,681,043 to 3,684,129 _3430 Dsui_3431: Dsui_3431 - Protein of unknown function (DUF3240), at 3,684,126 to 3,684,446 _3431 Dsui_3432: Dsui_3432 - outer membrane protein, at 3,684,446 to 3,685,723 _3432 Dsui_3433: Dsui_3433 - putative acetyltransferase, at 3,685,848 to 3,686,354 _3433 Dsui_3434: Dsui_3434 - hypothetical protein, at 3,686,437 to 3,686,694 _3434 Position (kb) 3684 3685 3686Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3683.504 kb on + strand, within Dsui_3430at 3683.538 kb on + strand, within Dsui_3430at 3683.546 kb on - strand, within Dsui_3430at 3683.653 kb on - strandat 3683.716 kb on - strand, within Dsui_3430at 3683.796 kb on + strand, within Dsui_3430at 3683.979 kb on - strandat 3684.047 kb on + strandat 3684.047 kb on + strandat 3684.055 kb on + strandat 3684.110 kb on - strandat 3684.130 kb on + strandat 3684.130 kb on - strandat 3684.131 kb on - strandat 3684.210 kb on - strand, within Dsui_3431at 3684.226 kb on - strand, within Dsui_3431at 3684.354 kb on + strand, within Dsui_3431at 3684.363 kb on + strand, within Dsui_3431at 3684.407 kb on + strand, within Dsui_3431at 3684.420 kb on - strandat 3684.521 kb on + strandat 3684.589 kb on + strand, within Dsui_3432at 3684.597 kb on - strand, within Dsui_3432at 3684.648 kb on - strandat 3684.702 kb on - strand, within Dsui_3432at 3684.955 kb on + strand, within Dsui_3432at 3685.030 kb on + strand, within Dsui_3432at 3685.038 kb on - strandat 3685.049 kb on - strandat 3685.194 kb on + strand, within Dsui_3432at 3685.212 kb on - strandat 3685.246 kb on + strand, within Dsui_3432at 3685.251 kb on + strand, within Dsui_3432at 3685.275 kb on + strand, within Dsui_3432at 3685.283 kb on - strandat 3685.283 kb on - strand, within Dsui_3432at 3685.396 kb on - strand, within Dsui_3432at 3685.435 kb on + strand, within Dsui_3432at 3685.680 kb on + strandat 3685.688 kb on - strandat 3685.763 kb on + strandat 3686.050 kb on - strand, within Dsui_3433at 3686.124 kb on - strand, within Dsui_3433at 3686.217 kb on - strandat 3686.226 kb on + strandat 3686.288 kb on - strandat 3686.294 kb on - strandat 3686.389 kb on - strandat 3686.404 kb on - strandat 3686.467 kb on + strand, within Dsui_3434at 3686.528 kb on + strand, within Dsui_3434at 3686.678 kb on + strandat 3686.698 kb on + strandat 3686.723 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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3,683,504 + Dsui_3430 0.80 -5.4
3,683,538 + Dsui_3430 0.81 -4.2
3,683,546 - Dsui_3430 0.81 -1.6
3,683,653 - +0.8
3,683,716 - Dsui_3430 0.87 -0.8
3,683,796 + Dsui_3430 0.89 -4.1
3,683,979 - +0.8
3,684,047 + -3.9
3,684,047 + -3.8
3,684,055 + -5.6
3,684,110 - +0.8
3,684,130 + -1.8
3,684,130 - +0.8
3,684,131 - +0.8
3,684,210 - Dsui_3431 0.26 -0.2
3,684,226 - Dsui_3431 0.31 -1.8
3,684,354 + Dsui_3431 0.71 -0.8
3,684,363 + Dsui_3431 0.74 -0.2
3,684,407 + Dsui_3431 0.88 -0.2
3,684,420 - +0.8
3,684,521 + -4.1
3,684,589 + Dsui_3432 0.11 -3.3
3,684,597 - Dsui_3432 0.12 +0.8
3,684,648 - -0.2
3,684,702 - Dsui_3432 0.20 -2.0
3,684,955 + Dsui_3432 0.40 -5.2
3,685,030 + Dsui_3432 0.46 -4.2
3,685,038 - +0.8
3,685,049 - -0.2
3,685,194 + Dsui_3432 0.59 -4.5
3,685,212 - +0.8
3,685,246 + Dsui_3432 0.63 -5.7
3,685,251 + Dsui_3432 0.63 -4.0
3,685,275 + Dsui_3432 0.65 -4.9
3,685,283 - +0.8
3,685,283 - Dsui_3432 0.65 +0.8
3,685,396 - Dsui_3432 0.74 -1.6
3,685,435 + Dsui_3432 0.77 -5.0
3,685,680 + -2.0
3,685,688 - -1.2
3,685,763 + -0.2
3,686,050 - Dsui_3433 0.40 -1.8
3,686,124 - Dsui_3433 0.54 -0.2
3,686,217 - -0.2
3,686,226 + +0.8
3,686,288 - +0.8
3,686,294 - +0.8
3,686,389 - -0.2
3,686,404 - +0.8
3,686,467 + Dsui_3434 0.12 +0.8
3,686,528 + Dsui_3434 0.35 -2.0
3,686,678 + -0.2
3,686,698 + +0.8
3,686,723 + +0.0

Or see this region's nucleotide sequence