Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3429 and Dsui_3430 overlap by 1 nucleotides Dsui_3430 and Dsui_3431 overlap by 4 nucleotides Dsui_3431 and Dsui_3432 overlap by 1 nucleotides
Dsui_3429: Dsui_3429 - RND family efflux transporter, MFP subunit, at 3,679,886 to 3,681,043
_3429
Dsui_3430: Dsui_3430 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,681,043 to 3,684,129
_3430
Dsui_3431: Dsui_3431 - Protein of unknown function (DUF3240), at 3,684,126 to 3,684,446
_3431
Dsui_3432: Dsui_3432 - outer membrane protein, at 3,684,446 to 3,685,723
_3432
Position (kb)
3681
3682
3683
3684
3685 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 3680.143 kb on + strand, within Dsui_3429 at 3680.347 kb on + strand, within Dsui_3429 at 3680.592 kb on - strand, within Dsui_3429 at 3680.603 kb on - strand, within Dsui_3429 at 3680.804 kb on + strand, within Dsui_3429 at 3680.804 kb on + strand, within Dsui_3429 at 3680.919 kb on + strand, within Dsui_3429 at 3681.062 kb on + strand at 3681.070 kb on - strand at 3681.147 kb on - strand at 3681.269 kb on + strand at 3681.269 kb on + strand at 3681.277 kb on - strand at 3681.348 kb on + strand at 3681.502 kb on + strand, within Dsui_3430 at 3681.502 kb on + strand, within Dsui_3430 at 3681.663 kb on - strand, within Dsui_3430 at 3681.726 kb on + strand, within Dsui_3430 at 3681.809 kb on + strand, within Dsui_3430 at 3681.860 kb on - strand at 3681.933 kb on + strand, within Dsui_3430 at 3681.933 kb on + strand, within Dsui_3430 at 3681.941 kb on - strand at 3681.977 kb on - strand at 3681.986 kb on - strand, within Dsui_3430 at 3682.139 kb on + strand, within Dsui_3430 at 3682.191 kb on + strand, within Dsui_3430 at 3682.206 kb on - strand, within Dsui_3430 at 3682.286 kb on - strand, within Dsui_3430 at 3682.403 kb on + strand, within Dsui_3430 at 3682.449 kb on - strand at 3682.501 kb on + strand, within Dsui_3430 at 3682.577 kb on + strand, within Dsui_3430 at 3682.582 kb on + strand, within Dsui_3430 at 3682.582 kb on + strand, within Dsui_3430 at 3682.582 kb on + strand, within Dsui_3430 at 3682.594 kb on + strand, within Dsui_3430 at 3682.691 kb on + strand, within Dsui_3430 at 3682.750 kb on - strand at 3682.846 kb on + strand, within Dsui_3430 at 3682.846 kb on + strand, within Dsui_3430 at 3682.854 kb on - strand at 3682.862 kb on + strand, within Dsui_3430 at 3682.862 kb on - strand, within Dsui_3430 at 3682.985 kb on + strand, within Dsui_3430 at 3682.993 kb on - strand at 3683.079 kb on + strand, within Dsui_3430 at 3683.112 kb on + strand, within Dsui_3430 at 3683.112 kb on + strand, within Dsui_3430 at 3683.112 kb on + strand, within Dsui_3430 at 3683.120 kb on - strand at 3683.120 kb on - strand at 3683.180 kb on - strand at 3683.212 kb on + strand, within Dsui_3430 at 3683.215 kb on - strand, within Dsui_3430 at 3683.300 kb on + strand, within Dsui_3430 at 3683.300 kb on + strand, within Dsui_3430 at 3683.504 kb on + strand, within Dsui_3430 at 3683.538 kb on + strand, within Dsui_3430 at 3683.546 kb on - strand, within Dsui_3430 at 3683.653 kb on - strand at 3683.716 kb on - strand, within Dsui_3430 at 3683.796 kb on + strand, within Dsui_3430 at 3683.979 kb on - strand at 3684.047 kb on + strand at 3684.047 kb on + strand at 3684.055 kb on + strand at 3684.110 kb on - strand at 3684.130 kb on + strand at 3684.130 kb on - strand at 3684.131 kb on - strand at 3684.210 kb on - strand, within Dsui_3431 at 3684.226 kb on - strand, within Dsui_3431 at 3684.354 kb on + strand, within Dsui_3431 at 3684.363 kb on + strand, within Dsui_3431 at 3684.407 kb on + strand, within Dsui_3431 at 3684.420 kb on - strand at 3684.521 kb on + strand at 3684.589 kb on + strand, within Dsui_3432 at 3684.597 kb on - strand, within Dsui_3432 at 3684.648 kb on - strand at 3684.702 kb on - strand, within Dsui_3432 at 3684.955 kb on + strand, within Dsui_3432 at 3685.030 kb on + strand, within Dsui_3432 at 3685.038 kb on - strand at 3685.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 3,680,143 + Dsui_3429 0.22 -5.2 3,680,347 + Dsui_3429 0.40 -4.8 3,680,592 - Dsui_3429 0.61 -0.2 3,680,603 - Dsui_3429 0.62 -1.2 3,680,804 + Dsui_3429 0.79 -6.1 3,680,804 + Dsui_3429 0.79 -6.1 3,680,919 + Dsui_3429 0.89 -4.3 3,681,062 + -3.2 3,681,070 - -0.2 3,681,147 - -0.2 3,681,269 + -6.4 3,681,269 + -3.0 3,681,277 - +0.8 3,681,348 + -5.4 3,681,502 + Dsui_3430 0.15 -4.6 3,681,502 + Dsui_3430 0.15 -3.6 3,681,663 - Dsui_3430 0.20 -0.2 3,681,726 + Dsui_3430 0.22 -6.4 3,681,809 + Dsui_3430 0.25 -7.0 3,681,860 - +0.8 3,681,933 + Dsui_3430 0.29 -4.6 3,681,933 + Dsui_3430 0.29 -4.3 3,681,941 - +0.8 3,681,977 - +0.8 3,681,986 - Dsui_3430 0.31 -0.8 3,682,139 + Dsui_3430 0.36 -4.9 3,682,191 + Dsui_3430 0.37 -5.1 3,682,206 - Dsui_3430 0.38 -0.8 3,682,286 - Dsui_3430 0.40 -0.2 3,682,403 + Dsui_3430 0.44 -5.8 3,682,449 - +0.8 3,682,501 + Dsui_3430 0.47 -5.3 3,682,577 + Dsui_3430 0.50 -5.2 3,682,582 + Dsui_3430 0.50 -5.0 3,682,582 + Dsui_3430 0.50 -4.2 3,682,582 + Dsui_3430 0.50 -4.6 3,682,594 + Dsui_3430 0.50 -4.5 3,682,691 + Dsui_3430 0.53 -1.4 3,682,750 - +0.8 3,682,846 + Dsui_3430 0.58 -5.8 3,682,846 + Dsui_3430 0.58 -2.6 3,682,854 - +0.8 3,682,862 + Dsui_3430 0.59 -3.5 3,682,862 - Dsui_3430 0.59 -0.8 3,682,985 + Dsui_3430 0.63 -3.0 3,682,993 - -0.2 3,683,079 + Dsui_3430 0.66 -4.6 3,683,112 + Dsui_3430 0.67 -4.2 3,683,112 + Dsui_3430 0.67 -5.0 3,683,112 + Dsui_3430 0.67 -6.1 3,683,120 - +0.8 3,683,120 - -0.2 3,683,180 - -0.8 3,683,212 + Dsui_3430 0.70 -4.5 3,683,215 - Dsui_3430 0.70 +0.8 3,683,300 + Dsui_3430 0.73 -5.7 3,683,300 + Dsui_3430 0.73 -1.8 3,683,504 + Dsui_3430 0.80 -5.4 3,683,538 + Dsui_3430 0.81 -4.2 3,683,546 - Dsui_3430 0.81 -1.6 3,683,653 - +0.8 3,683,716 - Dsui_3430 0.87 -0.8 3,683,796 + Dsui_3430 0.89 -4.1 3,683,979 - +0.8 3,684,047 + -3.9 3,684,047 + -3.8 3,684,055 + -5.6 3,684,110 - +0.8 3,684,130 + -1.8 3,684,130 - +0.8 3,684,131 - +0.8 3,684,210 - Dsui_3431 0.26 -0.2 3,684,226 - Dsui_3431 0.31 -1.8 3,684,354 + Dsui_3431 0.71 -0.8 3,684,363 + Dsui_3431 0.74 -0.2 3,684,407 + Dsui_3431 0.88 -0.2 3,684,420 - +0.8 3,684,521 + -4.1 3,684,589 + Dsui_3432 0.11 -3.3 3,684,597 - Dsui_3432 0.12 +0.8 3,684,648 - -0.2 3,684,702 - Dsui_3432 0.20 -2.0 3,684,955 + Dsui_3432 0.40 -5.2 3,685,030 + Dsui_3432 0.46 -4.2 3,685,038 - +0.8 3,685,049 - -0.2
Or see this region's nucleotide sequence