Strain Fitness in Dechlorosoma suillum PS around Dsui_3430

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3429 and Dsui_3430 overlap by 1 nucleotidesDsui_3430 and Dsui_3431 overlap by 4 nucleotidesDsui_3431 and Dsui_3432 overlap by 1 nucleotides Dsui_3429: Dsui_3429 - RND family efflux transporter, MFP subunit, at 3,679,886 to 3,681,043 _3429 Dsui_3430: Dsui_3430 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,681,043 to 3,684,129 _3430 Dsui_3431: Dsui_3431 - Protein of unknown function (DUF3240), at 3,684,126 to 3,684,446 _3431 Dsui_3432: Dsui_3432 - outer membrane protein, at 3,684,446 to 3,685,723 _3432 Position (kb) 3681 3682 3683 3684 3685Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 3680.143 kb on + strand, within Dsui_3429at 3680.347 kb on + strand, within Dsui_3429at 3680.592 kb on - strand, within Dsui_3429at 3680.603 kb on - strand, within Dsui_3429at 3680.804 kb on + strand, within Dsui_3429at 3680.804 kb on + strand, within Dsui_3429at 3680.919 kb on + strand, within Dsui_3429at 3681.062 kb on + strandat 3681.070 kb on - strandat 3681.147 kb on - strandat 3681.269 kb on + strandat 3681.269 kb on + strandat 3681.277 kb on - strandat 3681.348 kb on + strandat 3681.502 kb on + strand, within Dsui_3430at 3681.502 kb on + strand, within Dsui_3430at 3681.663 kb on - strand, within Dsui_3430at 3681.726 kb on + strand, within Dsui_3430at 3681.809 kb on + strand, within Dsui_3430at 3681.860 kb on - strandat 3681.933 kb on + strand, within Dsui_3430at 3681.933 kb on + strand, within Dsui_3430at 3681.941 kb on - strandat 3681.977 kb on - strandat 3681.986 kb on - strand, within Dsui_3430at 3682.139 kb on + strand, within Dsui_3430at 3682.191 kb on + strand, within Dsui_3430at 3682.206 kb on - strand, within Dsui_3430at 3682.286 kb on - strand, within Dsui_3430at 3682.403 kb on + strand, within Dsui_3430at 3682.449 kb on - strandat 3682.501 kb on + strand, within Dsui_3430at 3682.577 kb on + strand, within Dsui_3430at 3682.582 kb on + strand, within Dsui_3430at 3682.582 kb on + strand, within Dsui_3430at 3682.582 kb on + strand, within Dsui_3430at 3682.594 kb on + strand, within Dsui_3430at 3682.691 kb on + strand, within Dsui_3430at 3682.750 kb on - strandat 3682.846 kb on + strand, within Dsui_3430at 3682.846 kb on + strand, within Dsui_3430at 3682.854 kb on - strandat 3682.862 kb on + strand, within Dsui_3430at 3682.862 kb on - strand, within Dsui_3430at 3682.985 kb on + strand, within Dsui_3430at 3682.993 kb on - strandat 3683.079 kb on + strand, within Dsui_3430at 3683.112 kb on + strand, within Dsui_3430at 3683.112 kb on + strand, within Dsui_3430at 3683.112 kb on + strand, within Dsui_3430at 3683.120 kb on - strandat 3683.120 kb on - strandat 3683.180 kb on - strandat 3683.212 kb on + strand, within Dsui_3430at 3683.215 kb on - strand, within Dsui_3430at 3683.300 kb on + strand, within Dsui_3430at 3683.300 kb on + strand, within Dsui_3430at 3683.504 kb on + strand, within Dsui_3430at 3683.538 kb on + strand, within Dsui_3430at 3683.546 kb on - strand, within Dsui_3430at 3683.653 kb on - strandat 3683.716 kb on - strand, within Dsui_3430at 3683.796 kb on + strand, within Dsui_3430at 3683.979 kb on - strandat 3684.047 kb on + strandat 3684.047 kb on + strandat 3684.055 kb on + strandat 3684.110 kb on - strandat 3684.130 kb on + strandat 3684.130 kb on - strandat 3684.131 kb on - strandat 3684.210 kb on - strand, within Dsui_3431at 3684.226 kb on - strand, within Dsui_3431at 3684.354 kb on + strand, within Dsui_3431at 3684.363 kb on + strand, within Dsui_3431at 3684.407 kb on + strand, within Dsui_3431at 3684.420 kb on - strandat 3684.521 kb on + strandat 3684.589 kb on + strand, within Dsui_3432at 3684.597 kb on - strand, within Dsui_3432at 3684.648 kb on - strandat 3684.702 kb on - strand, within Dsui_3432at 3684.955 kb on + strand, within Dsui_3432at 3685.030 kb on + strand, within Dsui_3432at 3685.038 kb on - strandat 3685.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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3,680,143 + Dsui_3429 0.22 -5.2
3,680,347 + Dsui_3429 0.40 -4.8
3,680,592 - Dsui_3429 0.61 -0.2
3,680,603 - Dsui_3429 0.62 -1.2
3,680,804 + Dsui_3429 0.79 -6.1
3,680,804 + Dsui_3429 0.79 -6.1
3,680,919 + Dsui_3429 0.89 -4.3
3,681,062 + -3.2
3,681,070 - -0.2
3,681,147 - -0.2
3,681,269 + -6.4
3,681,269 + -3.0
3,681,277 - +0.8
3,681,348 + -5.4
3,681,502 + Dsui_3430 0.15 -4.6
3,681,502 + Dsui_3430 0.15 -3.6
3,681,663 - Dsui_3430 0.20 -0.2
3,681,726 + Dsui_3430 0.22 -6.4
3,681,809 + Dsui_3430 0.25 -7.0
3,681,860 - +0.8
3,681,933 + Dsui_3430 0.29 -4.6
3,681,933 + Dsui_3430 0.29 -4.3
3,681,941 - +0.8
3,681,977 - +0.8
3,681,986 - Dsui_3430 0.31 -0.8
3,682,139 + Dsui_3430 0.36 -4.9
3,682,191 + Dsui_3430 0.37 -5.1
3,682,206 - Dsui_3430 0.38 -0.8
3,682,286 - Dsui_3430 0.40 -0.2
3,682,403 + Dsui_3430 0.44 -5.8
3,682,449 - +0.8
3,682,501 + Dsui_3430 0.47 -5.3
3,682,577 + Dsui_3430 0.50 -5.2
3,682,582 + Dsui_3430 0.50 -5.0
3,682,582 + Dsui_3430 0.50 -4.2
3,682,582 + Dsui_3430 0.50 -4.6
3,682,594 + Dsui_3430 0.50 -4.5
3,682,691 + Dsui_3430 0.53 -1.4
3,682,750 - +0.8
3,682,846 + Dsui_3430 0.58 -5.8
3,682,846 + Dsui_3430 0.58 -2.6
3,682,854 - +0.8
3,682,862 + Dsui_3430 0.59 -3.5
3,682,862 - Dsui_3430 0.59 -0.8
3,682,985 + Dsui_3430 0.63 -3.0
3,682,993 - -0.2
3,683,079 + Dsui_3430 0.66 -4.6
3,683,112 + Dsui_3430 0.67 -4.2
3,683,112 + Dsui_3430 0.67 -5.0
3,683,112 + Dsui_3430 0.67 -6.1
3,683,120 - +0.8
3,683,120 - -0.2
3,683,180 - -0.8
3,683,212 + Dsui_3430 0.70 -4.5
3,683,215 - Dsui_3430 0.70 +0.8
3,683,300 + Dsui_3430 0.73 -5.7
3,683,300 + Dsui_3430 0.73 -1.8
3,683,504 + Dsui_3430 0.80 -5.4
3,683,538 + Dsui_3430 0.81 -4.2
3,683,546 - Dsui_3430 0.81 -1.6
3,683,653 - +0.8
3,683,716 - Dsui_3430 0.87 -0.8
3,683,796 + Dsui_3430 0.89 -4.1
3,683,979 - +0.8
3,684,047 + -3.9
3,684,047 + -3.8
3,684,055 + -5.6
3,684,110 - +0.8
3,684,130 + -1.8
3,684,130 - +0.8
3,684,131 - +0.8
3,684,210 - Dsui_3431 0.26 -0.2
3,684,226 - Dsui_3431 0.31 -1.8
3,684,354 + Dsui_3431 0.71 -0.8
3,684,363 + Dsui_3431 0.74 -0.2
3,684,407 + Dsui_3431 0.88 -0.2
3,684,420 - +0.8
3,684,521 + -4.1
3,684,589 + Dsui_3432 0.11 -3.3
3,684,597 - Dsui_3432 0.12 +0.8
3,684,648 - -0.2
3,684,702 - Dsui_3432 0.20 -2.0
3,684,955 + Dsui_3432 0.40 -5.2
3,685,030 + Dsui_3432 0.46 -4.2
3,685,038 - +0.8
3,685,049 - -0.2

Or see this region's nucleotide sequence