Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3362 and Dsui_3363 are separated by 471 nucleotides Dsui_3363 and Dsui_3364 are separated by 98 nucleotides
Dsui_3362: Dsui_3362 - hypothetical protein, at 3,601,672 to 3,602,118
_3362
Dsui_3363: Dsui_3363 - hypothetical protein, at 3,602,590 to 3,603,486
_3363
Dsui_3364: Dsui_3364 - alanine--tRNA ligase, at 3,603,585 to 3,606,278
_3364
Position (kb)
3602
3603
3604 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3601.593 kb on + strand at 3601.601 kb on - strand at 3601.647 kb on - strand at 3601.665 kb on + strand at 3601.665 kb on - strand at 3601.686 kb on - strand at 3601.720 kb on + strand, within Dsui_3362 at 3601.727 kb on - strand, within Dsui_3362 at 3601.744 kb on - strand, within Dsui_3362 at 3601.752 kb on + strand, within Dsui_3362 at 3601.752 kb on + strand, within Dsui_3362 at 3601.760 kb on - strand, within Dsui_3362 at 3601.782 kb on - strand, within Dsui_3362 at 3601.820 kb on - strand, within Dsui_3362 at 3601.892 kb on - strand, within Dsui_3362 at 3601.910 kb on - strand, within Dsui_3362 at 3601.917 kb on - strand, within Dsui_3362 at 3601.923 kb on + strand, within Dsui_3362 at 3601.923 kb on + strand, within Dsui_3362 at 3601.923 kb on + strand, within Dsui_3362 at 3601.923 kb on + strand, within Dsui_3362 at 3601.958 kb on + strand, within Dsui_3362 at 3601.958 kb on + strand, within Dsui_3362 at 3601.958 kb on + strand, within Dsui_3362 at 3601.958 kb on + strand, within Dsui_3362 at 3601.958 kb on + strand, within Dsui_3362 at 3601.958 kb on + strand, within Dsui_3362 at 3601.966 kb on - strand, within Dsui_3362 at 3601.966 kb on - strand, within Dsui_3362 at 3601.966 kb on - strand, within Dsui_3362 at 3601.966 kb on - strand, within Dsui_3362 at 3601.966 kb on - strand at 3601.966 kb on - strand, within Dsui_3362 at 3601.991 kb on + strand, within Dsui_3362 at 3601.991 kb on + strand, within Dsui_3362 at 3601.993 kb on - strand, within Dsui_3362 at 3601.999 kb on - strand at 3602.015 kb on - strand, within Dsui_3362 at 3602.039 kb on + strand, within Dsui_3362 at 3602.103 kb on - strand at 3602.162 kb on + strand at 3602.174 kb on + strand at 3602.198 kb on - strand at 3602.198 kb on - strand at 3602.203 kb on + strand at 3602.203 kb on + strand at 3602.203 kb on + strand at 3602.211 kb on - strand at 3602.226 kb on - strand at 3602.226 kb on - strand at 3602.226 kb on - strand at 3602.226 kb on - strand at 3602.234 kb on - strand at 3602.257 kb on + strand at 3602.318 kb on + strand at 3602.318 kb on + strand at 3602.323 kb on + strand at 3602.328 kb on + strand at 3602.328 kb on + strand at 3602.328 kb on + strand at 3602.331 kb on - strand at 3602.335 kb on + strand at 3602.340 kb on + strand at 3602.343 kb on - strand at 3602.348 kb on - strand at 3602.357 kb on + strand at 3602.389 kb on + strand at 3602.392 kb on - strand at 3602.402 kb on - strand at 3602.442 kb on + strand at 3602.458 kb on - strand at 3602.485 kb on + strand at 3602.486 kb on + strand at 3602.486 kb on + strand at 3602.486 kb on + strand at 3602.486 kb on + strand at 3602.494 kb on - strand at 3602.494 kb on - strand at 3602.494 kb on - strand at 3602.524 kb on - strand at 3602.553 kb on + strand at 3602.553 kb on + strand at 3602.561 kb on - strand at 3602.561 kb on - strand at 3602.566 kb on - strand at 3602.588 kb on + strand at 3602.646 kb on - strand at 3602.653 kb on + strand at 3602.653 kb on + strand at 3602.661 kb on - strand at 3602.661 kb on - strand at 3602.685 kb on - strand, within Dsui_3363 at 3602.700 kb on + strand, within Dsui_3363 at 3602.705 kb on + strand, within Dsui_3363 at 3602.705 kb on + strand, within Dsui_3363 at 3602.709 kb on + strand, within Dsui_3363 at 3602.710 kb on + strand, within Dsui_3363 at 3602.722 kb on - strand, within Dsui_3363 at 3602.753 kb on - strand, within Dsui_3363 at 3602.760 kb on + strand, within Dsui_3363 at 3602.768 kb on + strand, within Dsui_3363 at 3602.768 kb on + strand, within Dsui_3363 at 3602.768 kb on + strand, within Dsui_3363 at 3602.768 kb on - strand, within Dsui_3363 at 3602.776 kb on - strand, within Dsui_3363 at 3602.778 kb on - strand, within Dsui_3363 at 3602.820 kb on - strand, within Dsui_3363 at 3602.893 kb on + strand, within Dsui_3363 at 3602.914 kb on + strand, within Dsui_3363 at 3602.922 kb on + strand, within Dsui_3363 at 3602.922 kb on + strand, within Dsui_3363 at 3602.922 kb on + strand, within Dsui_3363 at 3602.930 kb on - strand, within Dsui_3363 at 3602.930 kb on - strand, within Dsui_3363 at 3602.930 kb on - strand, within Dsui_3363 at 3602.945 kb on - strand, within Dsui_3363 at 3602.971 kb on + strand, within Dsui_3363 at 3602.991 kb on - strand, within Dsui_3363 at 3603.034 kb on + strand, within Dsui_3363 at 3603.042 kb on - strand, within Dsui_3363 at 3603.042 kb on - strand, within Dsui_3363 at 3603.042 kb on - strand, within Dsui_3363 at 3603.050 kb on - strand, within Dsui_3363 at 3603.085 kb on + strand, within Dsui_3363 at 3603.095 kb on + strand, within Dsui_3363 at 3603.095 kb on - strand, within Dsui_3363 at 3603.102 kb on + strand, within Dsui_3363 at 3603.116 kb on + strand, within Dsui_3363 at 3603.189 kb on - strand, within Dsui_3363 at 3603.246 kb on - strand, within Dsui_3363 at 3603.266 kb on + strand, within Dsui_3363 at 3603.291 kb on - strand, within Dsui_3363 at 3603.305 kb on + strand, within Dsui_3363 at 3603.305 kb on + strand, within Dsui_3363 at 3603.305 kb on + strand, within Dsui_3363 at 3603.310 kb on + strand, within Dsui_3363 at 3603.313 kb on - strand, within Dsui_3363 at 3603.313 kb on - strand, within Dsui_3363 at 3603.319 kb on + strand, within Dsui_3363 at 3603.337 kb on + strand, within Dsui_3363 at 3603.338 kb on + strand, within Dsui_3363 at 3603.366 kb on + strand, within Dsui_3363 at 3603.408 kb on + strand at 3603.444 kb on + strand at 3603.444 kb on + strand at 3603.469 kb on - strand at 3603.486 kb on + strand at 3603.486 kb on + strand at 3603.489 kb on - strand at 3603.493 kb on + strand at 3603.493 kb on + strand at 3603.493 kb on + strand at 3603.501 kb on - strand at 3603.501 kb on - strand at 3603.542 kb on + strand at 3603.583 kb on + strand at 3603.591 kb on - strand at 3603.591 kb on - strand at 3603.591 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 3,601,593 + -0.2 3,601,601 - +0.8 3,601,647 - -0.2 3,601,665 + +1.6 3,601,665 - -2.7 3,601,686 - -1.2 3,601,720 + Dsui_3362 0.11 -0.6 3,601,727 - Dsui_3362 0.12 -0.2 3,601,744 - Dsui_3362 0.16 +0.8 3,601,752 + Dsui_3362 0.18 -1.6 3,601,752 + Dsui_3362 0.18 -0.4 3,601,760 - Dsui_3362 0.20 -1.2 3,601,782 - Dsui_3362 0.25 -0.2 3,601,820 - Dsui_3362 0.33 +0.8 3,601,892 - Dsui_3362 0.49 +0.8 3,601,910 - Dsui_3362 0.53 +0.8 3,601,917 - Dsui_3362 0.55 -0.2 3,601,923 + Dsui_3362 0.56 -0.7 3,601,923 + Dsui_3362 0.56 -1.0 3,601,923 + Dsui_3362 0.56 -0.8 3,601,923 + Dsui_3362 0.56 -0.5 3,601,958 + Dsui_3362 0.64 -0.8 3,601,958 + Dsui_3362 0.64 -0.2 3,601,958 + Dsui_3362 0.64 -0.9 3,601,958 + Dsui_3362 0.64 -1.0 3,601,958 + Dsui_3362 0.64 -0.6 3,601,958 + Dsui_3362 0.64 -0.6 3,601,966 - Dsui_3362 0.66 +0.8 3,601,966 - Dsui_3362 0.66 -1.2 3,601,966 - Dsui_3362 0.66 +0.8 3,601,966 - Dsui_3362 0.66 +0.8 3,601,966 - +0.8 3,601,966 - Dsui_3362 0.66 -1.2 3,601,991 + Dsui_3362 0.71 -0.5 3,601,991 + Dsui_3362 0.71 -0.8 3,601,993 - Dsui_3362 0.72 -1.6 3,601,999 - +0.8 3,602,015 - Dsui_3362 0.77 -0.8 3,602,039 + Dsui_3362 0.82 -0.5 3,602,103 - +0.8 3,602,162 + -0.8 3,602,174 + -1.4 3,602,198 - -1.2 3,602,198 - -1.2 3,602,203 + -0.2 3,602,203 + -0.5 3,602,203 + -0.2 3,602,211 - +0.8 3,602,226 - -0.2 3,602,226 - -0.8 3,602,226 - -0.8 3,602,226 - +0.8 3,602,234 - +0.8 3,602,257 + -0.6 3,602,318 + -0.4 3,602,318 + -0.1 3,602,323 + -0.4 3,602,328 + -1.1 3,602,328 + -0.8 3,602,328 + -0.4 3,602,331 - -1.6 3,602,335 + -0.9 3,602,340 + -1.3 3,602,343 - +0.8 3,602,348 - -0.8 3,602,357 + -0.3 3,602,389 + -0.3 3,602,392 - +0.8 3,602,402 - -0.2 3,602,442 + -0.8 3,602,458 - -0.2 3,602,485 + -0.6 3,602,486 + +0.6 3,602,486 + -1.1 3,602,486 + -1.1 3,602,486 + -0.9 3,602,494 - -1.6 3,602,494 - +0.8 3,602,494 - +0.8 3,602,524 - -1.6 3,602,553 + -0.5 3,602,553 + +1.0 3,602,561 - -0.2 3,602,561 - +0.8 3,602,566 - -1.2 3,602,588 + -0.9 3,602,646 - -0.2 3,602,653 + -1.9 3,602,653 + -0.5 3,602,661 - -1.8 3,602,661 - -0.6 3,602,685 - Dsui_3363 0.11 -0.8 3,602,700 + Dsui_3363 0.12 -0.6 3,602,705 + Dsui_3363 0.13 +1.2 3,602,705 + Dsui_3363 0.13 -0.8 3,602,709 + Dsui_3363 0.13 -1.5 3,602,710 + Dsui_3363 0.13 -0.5 3,602,722 - Dsui_3363 0.15 -0.8 3,602,753 - Dsui_3363 0.18 -1.2 3,602,760 + Dsui_3363 0.19 +0.8 3,602,768 + Dsui_3363 0.20 -0.2 3,602,768 + Dsui_3363 0.20 -1.2 3,602,768 + Dsui_3363 0.20 -1.6 3,602,768 - Dsui_3363 0.20 -0.8 3,602,776 - Dsui_3363 0.21 +0.8 3,602,778 - Dsui_3363 0.21 +1.8 3,602,820 - Dsui_3363 0.26 -0.2 3,602,893 + Dsui_3363 0.34 +0.8 3,602,914 + Dsui_3363 0.36 -0.2 3,602,922 + Dsui_3363 0.37 -0.8 3,602,922 + Dsui_3363 0.37 -0.2 3,602,922 + Dsui_3363 0.37 -1.8 3,602,930 - Dsui_3363 0.38 +0.8 3,602,930 - Dsui_3363 0.38 -0.0 3,602,930 - Dsui_3363 0.38 -1.2 3,602,945 - Dsui_3363 0.40 -0.2 3,602,971 + Dsui_3363 0.42 -1.8 3,602,991 - Dsui_3363 0.45 -0.2 3,603,034 + Dsui_3363 0.49 -0.2 3,603,042 - Dsui_3363 0.50 +0.8 3,603,042 - Dsui_3363 0.50 +0.8 3,603,042 - Dsui_3363 0.50 -2.2 3,603,050 - Dsui_3363 0.51 -0.2 3,603,085 + Dsui_3363 0.55 -0.7 3,603,095 + Dsui_3363 0.56 -0.3 3,603,095 - Dsui_3363 0.56 +0.8 3,603,102 + Dsui_3363 0.57 -1.8 3,603,116 + Dsui_3363 0.59 -1.9 3,603,189 - Dsui_3363 0.67 +0.8 3,603,246 - Dsui_3363 0.73 +1.0 3,603,266 + Dsui_3363 0.75 -0.8 3,603,291 - Dsui_3363 0.78 -2.4 3,603,305 + Dsui_3363 0.80 -0.1 3,603,305 + Dsui_3363 0.80 -0.5 3,603,305 + Dsui_3363 0.80 -0.7 3,603,310 + Dsui_3363 0.80 -0.5 3,603,313 - Dsui_3363 0.81 -2.4 3,603,313 - Dsui_3363 0.81 +0.8 3,603,319 + Dsui_3363 0.81 -0.9 3,603,337 + Dsui_3363 0.83 -0.2 3,603,338 + Dsui_3363 0.83 -0.9 3,603,366 + Dsui_3363 0.87 -0.2 3,603,408 + -0.5 3,603,444 + -0.5 3,603,444 + -1.4 3,603,469 - -0.4 3,603,486 + -0.8 3,603,486 + -0.6 3,603,489 - +1.3 3,603,493 + -1.4 3,603,493 + -2.0 3,603,493 + -0.2 3,603,501 - -1.7 3,603,501 - -3.7 3,603,542 + +0.2 3,603,583 + -2.0 3,603,591 - -0.1 3,603,591 - -0.2 3,603,591 - -0.7
Or see this region's nucleotide sequence