Strain Fitness in Dechlorosoma suillum PS around Dsui_3272

Experiment: ALP with Cobalt chloride 0.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3271 and Dsui_3272 are separated by 16 nucleotidesDsui_3272 and Dsui_3273 are separated by 81 nucleotidesDsui_3273 and Dsui_3274 are separated by 237 nucleotides Dsui_3271: Dsui_3271 - ATP-dependent protease Clp, ATPase subunit, at 3,509,723 to 3,510,724 _3271 Dsui_3272: Dsui_3272 - putative threonine efflux protein, at 3,510,741 to 3,511,388 _3272 Dsui_3273: Dsui_3273 - carbonic anhydrase, at 3,511,470 to 3,512,105 _3273 Dsui_3274: Dsui_3274 - dihydrodipicolinate reductase, at 3,512,343 to 3,513,014 _3274 Position (kb) 3510 3511 3512Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3509.763 kb on + strandat 3509.771 kb on - strandat 3509.878 kb on - strand, within Dsui_3271at 3510.010 kb on + strand, within Dsui_3271at 3510.018 kb on - strandat 3510.103 kb on + strand, within Dsui_3271at 3510.111 kb on - strandat 3510.117 kb on - strandat 3510.239 kb on + strand, within Dsui_3271at 3510.267 kb on + strand, within Dsui_3271at 3510.267 kb on + strand, within Dsui_3271at 3510.369 kb on + strandat 3510.379 kb on + strandat 3510.426 kb on - strand, within Dsui_3271at 3510.445 kb on + strand, within Dsui_3271at 3510.445 kb on + strand, within Dsui_3271at 3510.453 kb on - strand, within Dsui_3271at 3510.453 kb on - strandat 3510.453 kb on - strand, within Dsui_3271at 3510.453 kb on - strandat 3510.453 kb on - strand, within Dsui_3271at 3510.466 kb on + strand, within Dsui_3271at 3510.474 kb on - strandat 3510.474 kb on - strandat 3510.636 kb on + strandat 3510.643 kb on + strandat 3510.643 kb on + strandat 3510.651 kb on - strandat 3510.651 kb on - strandat 3510.712 kb on - strandat 3510.712 kb on - strandat 3510.733 kb on + strandat 3510.759 kb on + strandat 3510.769 kb on + strandat 3510.769 kb on + strandat 3510.777 kb on - strandat 3510.777 kb on - strandat 3510.777 kb on - strandat 3510.793 kb on + strandat 3510.841 kb on - strand, within Dsui_3272at 3510.903 kb on - strand, within Dsui_3272at 3510.919 kb on + strand, within Dsui_3272at 3511.014 kb on - strand, within Dsui_3272at 3511.127 kb on + strand, within Dsui_3272at 3511.135 kb on - strandat 3511.183 kb on + strand, within Dsui_3272at 3511.191 kb on - strandat 3511.229 kb on + strand, within Dsui_3272at 3511.232 kb on + strandat 3511.240 kb on + strand, within Dsui_3272at 3511.464 kb on - strandat 3511.464 kb on - strandat 3511.466 kb on + strandat 3511.466 kb on + strandat 3511.485 kb on - strandat 3511.582 kb on + strandat 3511.585 kb on - strand, within Dsui_3273at 3511.585 kb on - strand, within Dsui_3273at 3511.592 kb on + strandat 3511.677 kb on + strandat 3511.698 kb on - strand, within Dsui_3273at 3511.707 kb on + strandat 3511.707 kb on + strandat 3511.714 kb on + strandat 3511.722 kb on - strand, within Dsui_3273at 3511.753 kb on + strand, within Dsui_3273at 3511.904 kb on - strand, within Dsui_3273at 3511.981 kb on - strand, within Dsui_3273at 3512.006 kb on + strandat 3512.014 kb on - strand, within Dsui_3273at 3512.014 kb on - strand, within Dsui_3273at 3512.014 kb on - strand, within Dsui_3273at 3512.045 kb on - strandat 3512.050 kb on - strandat 3512.105 kb on + strandat 3512.113 kb on - strandat 3512.115 kb on + strandat 3512.115 kb on + strandat 3512.115 kb on + strandat 3512.115 kb on + strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.153 kb on - strandat 3512.265 kb on - strandat 3512.300 kb on + strandat 3512.308 kb on - strandat 3512.308 kb on - strandat 3512.352 kb on + strandat 3512.360 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
remove
3,509,763 + -2.5
3,509,771 - +0.7
3,509,878 - Dsui_3271 0.15 -2.4
3,510,010 + Dsui_3271 0.29 +0.7
3,510,018 - -0.9
3,510,103 + Dsui_3271 0.38 -0.3
3,510,111 - -0.3
3,510,117 - +0.7
3,510,239 + Dsui_3271 0.51 -1.6
3,510,267 + Dsui_3271 0.54 -1.6
3,510,267 + Dsui_3271 0.54 +0.7
3,510,369 + -0.3
3,510,379 + +0.7
3,510,426 - Dsui_3271 0.70 -0.3
3,510,445 + Dsui_3271 0.72 -1.3
3,510,445 + Dsui_3271 0.72 +0.7
3,510,453 - Dsui_3271 0.73 -0.9
3,510,453 - +0.7
3,510,453 - Dsui_3271 0.73 -1.3
3,510,453 - +0.7
3,510,453 - Dsui_3271 0.73 -1.6
3,510,466 + Dsui_3271 0.74 -0.3
3,510,474 - +0.7
3,510,474 - -0.9
3,510,636 + -0.5
3,510,643 + -0.3
3,510,643 + -0.3
3,510,651 - +0.7
3,510,651 - +0.7
3,510,712 - +0.7
3,510,712 - -0.3
3,510,733 + -0.3
3,510,759 + -0.8
3,510,769 + -1.8
3,510,769 + -0.3
3,510,777 - -0.8
3,510,777 - -2.3
3,510,777 - +0.7
3,510,793 + +0.7
3,510,841 - Dsui_3272 0.15 -2.4
3,510,903 - Dsui_3272 0.25 -1.6
3,510,919 + Dsui_3272 0.27 -1.8
3,511,014 - Dsui_3272 0.42 -0.8
3,511,127 + Dsui_3272 0.60 -1.3
3,511,135 - +0.7
3,511,183 + Dsui_3272 0.68 -1.6
3,511,191 - +0.7
3,511,229 + Dsui_3272 0.75 -1.3
3,511,232 + +0.7
3,511,240 + Dsui_3272 0.77 -0.8
3,511,464 - -0.6
3,511,464 - -1.2
3,511,466 + +0.7
3,511,466 + +0.7
3,511,485 - -0.0
3,511,582 + +0.7
3,511,585 - Dsui_3273 0.18 -0.4
3,511,585 - Dsui_3273 0.18 -0.8
3,511,592 + +0.7
3,511,677 + +0.7
3,511,698 - Dsui_3273 0.36 -0.6
3,511,707 + +0.7
3,511,707 + +0.7
3,511,714 + +0.7
3,511,722 - Dsui_3273 0.40 -0.1
3,511,753 + Dsui_3273 0.44 -1.3
3,511,904 - Dsui_3273 0.68 -1.0
3,511,981 - Dsui_3273 0.80 -0.4
3,512,006 + +0.7
3,512,014 - Dsui_3273 0.86 -0.3
3,512,014 - Dsui_3273 0.86 -1.2
3,512,014 - Dsui_3273 0.86 -0.1
3,512,045 - +0.3
3,512,050 - -0.7
3,512,105 + +0.7
3,512,113 - +1.0
3,512,115 + +0.7
3,512,115 + +0.7
3,512,115 + +0.7
3,512,115 + -1.6
3,512,123 - -1.5
3,512,123 - +0.5
3,512,123 - +0.5
3,512,123 - -0.6
3,512,123 - -0.8
3,512,123 - -5.0
3,512,123 - +0.4
3,512,123 - -0.6
3,512,123 - -2.3
3,512,123 - +1.7
3,512,123 - +0.1
3,512,123 - -0.8
3,512,123 - -0.3
3,512,123 - -0.5
3,512,123 - +2.2
3,512,153 - -1.2
3,512,265 - -2.1
3,512,300 + +0.7
3,512,308 - -0.8
3,512,308 - -1.3
3,512,352 + +0.7
3,512,360 - +0.2

Or see this region's nucleotide sequence